Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Gpr146-202ENSMUST00000053120 1040 ntBASIC15.41■□□□□ 0.06
Msx1P13297 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Msx1P13297 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Msx1P13297 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Msx1P13297 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Msx1P13297 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Msx1P13297 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Msx1P13297 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Msx1P13297 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC15.41■□□□□ 0.06
Msx1P13297 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Msx1P13297 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
Msx1P13297 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
Msx1P13297 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Msx1P13297 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Msx1P13297 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Msx1P13297 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
Msx1P13297 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC15.4■□□□□ 0.06
Msx1P13297 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
Msx1P13297 Gm6190-201ENSMUST00000220683 1374 ntBASIC15.4■□□□□ 0.06
Msx1P13297 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Msx1P13297 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Msx1P13297 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
Msx1P13297 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC15.4■□□□□ 0.06
Msx1P13297 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
Msx1P13297 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
Msx1P13297 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Msx1P13297 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC15.4■□□□□ 0.06
Msx1P13297 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC15.4■□□□□ 0.06
Msx1P13297 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
Msx1P13297 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Msx1P13297 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
Msx1P13297 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC15.4■□□□□ 0.06
Msx1P13297 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Msx1P13297 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC15.4■□□□□ 0.06
Msx1P13297 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.06
Msx1P13297 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Msx1P13297 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
Msx1P13297 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Msx1P13297 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Msx1P13297 Gm15743-202ENSMUST00000182690 1901 ntBASIC15.39■□□□□ 0.05
Msx1P13297 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Msx1P13297 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Msx1P13297 Gm45203-201ENSMUST00000206384 1831 ntBASIC15.39■□□□□ 0.05
Msx1P13297 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Msx1P13297 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC15.39■□□□□ 0.05
Msx1P13297 Gm13186-201ENSMUST00000118031 316 ntBASIC15.39■□□□□ 0.05
Msx1P13297 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC15.39■□□□□ 0.05
Msx1P13297 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Msx1P13297 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Msx1P13297 Gm43930-201ENSMUST00000203868 845 ntBASIC15.39■□□□□ 0.05
Msx1P13297 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC15.39■□□□□ 0.05
Msx1P13297 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Msx1P13297 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC15.39■□□□□ 0.05
Msx1P13297 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
Msx1P13297 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
Msx1P13297 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Msx1P13297 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Msx1P13297 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
Msx1P13297 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
Msx1P13297 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Msx1P13297 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
Msx1P13297 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Msx1P13297 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
Msx1P13297 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC15.38■□□□□ 0.05
Msx1P13297 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
Msx1P13297 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Msx1P13297 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Msx1P13297 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC15.38■□□□□ 0.05
Msx1P13297 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
Msx1P13297 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC15.38■□□□□ 0.05
Msx1P13297 Gm27525-201ENSMUST00000184465 107 ntBASIC15.38■□□□□ 0.05
Msx1P13297 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC15.38■□□□□ 0.05
Msx1P13297 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Msx1P13297 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Msx1P13297 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC15.38■□□□□ 0.05
Msx1P13297 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Msx1P13297 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Msx1P13297 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC15.38■□□□□ 0.05
Msx1P13297 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Msx1P13297 Usp32-202ENSMUST00000108075 7053 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
Msx1P13297 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Msx1P13297 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
Msx1P13297 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Msx1P13297 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Msx1P13297 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Msx1P13297 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Msx1P13297 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Msx1P13297 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Msx1P13297 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Msx1P13297 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Msx1P13297 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Msx1P13297 Gm15372-201ENSMUST00000120729 834 ntBASIC15.37■□□□□ 0.05
Msx1P13297 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Msx1P13297 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC15.37■□□□□ 0.05
Msx1P13297 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC15.37■□□□□ 0.05
Msx1P13297 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC15.37■□□□□ 0.05
Msx1P13297 4930431F12Rik-201ENSMUST00000079389 429 ntTSL 5 BASIC15.37■□□□□ 0.05
Msx1P13297 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
Msx1P13297 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC15.37■□□□□ 0.05
Msx1P13297 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 33 ms