Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Col1a1P11087 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Col1a1P11087 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC18.97■□□□□ 0.63
Col1a1P11087 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Col1a1P11087 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Col1a1P11087 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC18.97■□□□□ 0.63
Col1a1P11087 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Col1a1P11087 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Col1a1P11087 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Col1a1P11087 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Col1a1P11087 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
Col1a1P11087 6430710C18Rik-203ENSMUST00000136807 1540 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Col1a1P11087 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Col1a1P11087 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Col1a1P11087 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Col1a1P11087 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Col1a1P11087 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Col1a1P11087 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
Col1a1P11087 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
Col1a1P11087 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC18.97■□□□□ 0.63
Col1a1P11087 AC093926.2-201ENSMUST00000214468 1228 ntBASIC18.97■□□□□ 0.63
Col1a1P11087 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Col1a1P11087 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Col1a1P11087 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC18.96■□□□□ 0.63
Col1a1P11087 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Col1a1P11087 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
Col1a1P11087 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Col1a1P11087 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Col1a1P11087 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
Col1a1P11087 Dynlt1b-201ENSMUST00000179569 768 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Col1a1P11087 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Col1a1P11087 Gm27494-201ENSMUST00000184735 189 ntBASIC18.96■□□□□ 0.63
Col1a1P11087 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC18.96■□□□□ 0.63
Col1a1P11087 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
Col1a1P11087 Gm30684-201ENSMUST00000205632 600 ntTSL 3 BASIC18.96■□□□□ 0.63
Col1a1P11087 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Col1a1P11087 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Col1a1P11087 Ndufs8-201ENSMUST00000075092 963 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Col1a1P11087 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Col1a1P11087 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Col1a1P11087 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col1a1P11087 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col1a1P11087 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC18.95■□□□□ 0.62
Col1a1P11087 Lancl1-203ENSMUST00000119559 1385 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col1a1P11087 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col1a1P11087 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col1a1P11087 Mir1895-201ENSMUST00000122615 79 ntBASIC18.95■□□□□ 0.62
Col1a1P11087 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC18.95■□□□□ 0.62
Col1a1P11087 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC18.95■□□□□ 0.62
Col1a1P11087 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC18.95■□□□□ 0.62
Col1a1P11087 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
Col1a1P11087 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC18.95■□□□□ 0.62
Col1a1P11087 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC18.95■□□□□ 0.62
Col1a1P11087 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col1a1P11087 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col1a1P11087 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col1a1P11087 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col1a1P11087 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col1a1P11087 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col1a1P11087 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col1a1P11087 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col1a1P11087 Gm45799-202ENSMUST00000106786 409 ntAPPRIS ALT2 TSL 3 BASIC18.94■□□□□ 0.62
Col1a1P11087 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC18.94■□□□□ 0.62
Col1a1P11087 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col1a1P11087 Mir6956-201ENSMUST00000183598 62 ntBASIC18.94■□□□□ 0.62
Col1a1P11087 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC18.94■□□□□ 0.62
Col1a1P11087 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC18.94■□□□□ 0.62
Col1a1P11087 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Col1a1P11087 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col1a1P11087 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col1a1P11087 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col1a1P11087 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col1a1P11087 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col1a1P11087 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC18.93■□□□□ 0.62
Col1a1P11087 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col1a1P11087 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Col1a1P11087 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col1a1P11087 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Col1a1P11087 Pycrl-201ENSMUST00000053918 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col1a1P11087 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
Col1a1P11087 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Col1a1P11087 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Col1a1P11087 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col1a1P11087 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC18.93■□□□□ 0.62
Col1a1P11087 Dtx3-204ENSMUST00000130855 1925 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
Col1a1P11087 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col1a1P11087 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Col1a1P11087 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col1a1P11087 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col1a1P11087 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Col1a1P11087 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Col1a1P11087 Gm11185-201ENSMUST00000117732 1007 ntBASIC18.92■□□□□ 0.62
Col1a1P11087 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Col1a1P11087 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Col1a1P11087 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Col1a1P11087 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC18.92■□□□□ 0.62
Col1a1P11087 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
Col1a1P11087 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Col1a1P11087 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC18.92■□□□□ 0.62
Col1a1P11087 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 22 ms