Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Chmp6P0C0A3 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Chmp6P0C0A3 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Chmp6P0C0A3 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC17.74■□□□□ 0.43
Chmp6P0C0A3 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Chmp6P0C0A3 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC17.74■□□□□ 0.43
Chmp6P0C0A3 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC17.74■□□□□ 0.43
Chmp6P0C0A3 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Chmp6P0C0A3 Gm18115-201ENSMUST00000221209 621 ntBASIC17.74■□□□□ 0.43
Chmp6P0C0A3 AC107711.5-202ENSMUST00000226429 702 ntBASIC17.74■□□□□ 0.43
Chmp6P0C0A3 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Chmp6P0C0A3 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Chmp6P0C0A3 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC17.74■□□□□ 0.43
Chmp6P0C0A3 Lrrc7-204ENSMUST00000199890 6326 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Chmp6P0C0A3 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Chmp6P0C0A3 Gfra2-202ENSMUST00000227633 1480 ntBASIC17.74■□□□□ 0.43
Chmp6P0C0A3 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Chmp6P0C0A3 Glg1-204ENSMUST00000169020 7021 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Chmp6P0C0A3 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Chmp6P0C0A3 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Chmp6P0C0A3 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Chmp6P0C0A3 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC17.73■□□□□ 0.43
Chmp6P0C0A3 Gm5421-201ENSMUST00000181698 2354 ntBASIC17.73■□□□□ 0.43
Chmp6P0C0A3 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Chmp6P0C0A3 Gm6345-202ENSMUST00000180900 204 ntBASIC17.73■□□□□ 0.43
Chmp6P0C0A3 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Chmp6P0C0A3 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Chmp6P0C0A3 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Chmp6P0C0A3 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
Chmp6P0C0A3 Cpeb2-205ENSMUST00000169035 7050 ntAPPRIS P2 TSL 5 BASIC17.73■□□□□ 0.43
Chmp6P0C0A3 Gm11841-201ENSMUST00000117060 1963 ntBASIC17.73■□□□□ 0.43
Chmp6P0C0A3 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Chmp6P0C0A3 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Chmp6P0C0A3 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Chmp6P0C0A3 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Chmp6P0C0A3 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC17.73■□□□□ 0.43
Chmp6P0C0A3 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Chmp6P0C0A3 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Chmp6P0C0A3 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Chmp6P0C0A3 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Chmp6P0C0A3 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Chmp6P0C0A3 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Chmp6P0C0A3 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Chmp6P0C0A3 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
Chmp6P0C0A3 Gm6623-201ENSMUST00000173570 544 ntBASIC17.72■□□□□ 0.43
Chmp6P0C0A3 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Chmp6P0C0A3 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC17.72■□□□□ 0.43
Chmp6P0C0A3 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC17.72■□□□□ 0.43
Chmp6P0C0A3 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC17.72■□□□□ 0.43
Chmp6P0C0A3 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Chmp6P0C0A3 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Chmp6P0C0A3 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Chmp6P0C0A3 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Chmp6P0C0A3 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Chmp6P0C0A3 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Chmp6P0C0A3 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Chmp6P0C0A3 Nell1-201ENSMUST00000081872 6617 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Chmp6P0C0A3 Tmtc2-201ENSMUST00000061506 5629 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Chmp6P0C0A3 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Chmp6P0C0A3 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Chmp6P0C0A3 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Chmp6P0C0A3 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Chmp6P0C0A3 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Chmp6P0C0A3 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Chmp6P0C0A3 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Chmp6P0C0A3 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Chmp6P0C0A3 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
Chmp6P0C0A3 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Chmp6P0C0A3 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Chmp6P0C0A3 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Chmp6P0C0A3 Mir770-201ENSMUST00000103252 94 ntBASIC17.71■□□□□ 0.43
Chmp6P0C0A3 Lce1j-201ENSMUST00000107304 420 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Chmp6P0C0A3 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC17.71■□□□□ 0.43
Chmp6P0C0A3 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC17.71■□□□□ 0.43
Chmp6P0C0A3 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Chmp6P0C0A3 AC130671.1-201ENSMUST00000227384 1237 ntBASIC17.71■□□□□ 0.43
Chmp6P0C0A3 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Chmp6P0C0A3 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Chmp6P0C0A3 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Chmp6P0C0A3 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC17.71■□□□□ 0.43
Chmp6P0C0A3 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Chmp6P0C0A3 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.43
Chmp6P0C0A3 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Chmp6P0C0A3 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Chmp6P0C0A3 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC17.71■□□□□ 0.43
Chmp6P0C0A3 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Chmp6P0C0A3 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Chmp6P0C0A3 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Chmp6P0C0A3 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Chmp6P0C0A3 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Chmp6P0C0A3 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Chmp6P0C0A3 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Chmp6P0C0A3 Ttll5-201ENSMUST00000040179 5081 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Chmp6P0C0A3 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Chmp6P0C0A3 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Chmp6P0C0A3 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Chmp6P0C0A3 Gm11860-201ENSMUST00000122346 1010 ntBASIC17.7■□□□□ 0.42
Chmp6P0C0A3 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Chmp6P0C0A3 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Chmp6P0C0A3 Fubp1-205ENSMUST00000196695 2374 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 36.5 ms