Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC13.56□□□□□ -0.24
Hmgb3O54879 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Hmgb3O54879 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
Hmgb3O54879 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Hmgb3O54879 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
Hmgb3O54879 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
Hmgb3O54879 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Hmgb3O54879 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
Hmgb3O54879 Pde12-201ENSMUST00000052932 7725 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Hmgb3O54879 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC13.56□□□□□ -0.24
Hmgb3O54879 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Hmgb3O54879 Jph4-202ENSMUST00000124493 3200 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Hmgb3O54879 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
Hmgb3O54879 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
Hmgb3O54879 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Hmgb3O54879 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Hmgb3O54879 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Hmgb3O54879 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
Hmgb3O54879 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Hmgb3O54879 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Hmgb3O54879 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
Hmgb3O54879 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Hmgb3O54879 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Hmgb3O54879 Rgp1-202ENSMUST00000107886 5888 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Hmgb3O54879 Gm10654-201ENSMUST00000098653 1633 ntBASIC13.55□□□□□ -0.24
Hmgb3O54879 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC13.55□□□□□ -0.24
Hmgb3O54879 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Hmgb3O54879 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Hmgb3O54879 Gm11927-201ENSMUST00000118472 759 ntBASIC13.55□□□□□ -0.24
Hmgb3O54879 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Hmgb3O54879 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC13.55□□□□□ -0.24
Hmgb3O54879 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC13.55□□□□□ -0.24
Hmgb3O54879 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
Hmgb3O54879 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Hmgb3O54879 Cux1-204ENSMUST00000175975 10945 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Hmgb3O54879 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
Hmgb3O54879 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
Hmgb3O54879 Ints1-201ENSMUST00000072607 7102 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
Hmgb3O54879 Camkv-201ENSMUST00000035700 3277 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Hmgb3O54879 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC13.55□□□□□ -0.24
Hmgb3O54879 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Hmgb3O54879 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Hmgb3O54879 Kdm5b-201ENSMUST00000047714 8714 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Hmgb3O54879 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
Hmgb3O54879 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
Hmgb3O54879 Slc24a4-202ENSMUST00000159329 4465 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Hmgb3O54879 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Hmgb3O54879 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
Hmgb3O54879 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Hmgb3O54879 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Hmgb3O54879 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC13.54□□□□□ -0.24
Hmgb3O54879 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC13.54□□□□□ -0.24
Hmgb3O54879 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC13.54□□□□□ -0.24
Hmgb3O54879 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Hmgb3O54879 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Hmgb3O54879 Dapk1-201ENSMUST00000044083 5304 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Hmgb3O54879 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC13.54□□□□□ -0.24
Hmgb3O54879 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC13.54□□□□□ -0.24
Hmgb3O54879 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Hmgb3O54879 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC13.54□□□□□ -0.24
Hmgb3O54879 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC13.54□□□□□ -0.24
Hmgb3O54879 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC13.54□□□□□ -0.24
Hmgb3O54879 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
Hmgb3O54879 Satb2-201ENSMUST00000042857 6277 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
Hmgb3O54879 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC13.54□□□□□ -0.24
Hmgb3O54879 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC13.54□□□□□ -0.24
Hmgb3O54879 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Hmgb3O54879 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Hmgb3O54879 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Hmgb3O54879 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Hmgb3O54879 Chd7-201ENSMUST00000039267 9444 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
Hmgb3O54879 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
Hmgb3O54879 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
Hmgb3O54879 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
Hmgb3O54879 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Hmgb3O54879 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Hmgb3O54879 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Hmgb3O54879 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Hmgb3O54879 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Hmgb3O54879 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Hmgb3O54879 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
Hmgb3O54879 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Hmgb3O54879 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC13.53□□□□□ -0.24
Hmgb3O54879 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Hmgb3O54879 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Hmgb3O54879 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC13.53□□□□□ -0.24
Hmgb3O54879 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC13.53□□□□□ -0.24
Hmgb3O54879 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
Hmgb3O54879 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Hmgb3O54879 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Hmgb3O54879 Adcy3-204ENSMUST00000127756 4672 ntAPPRIS P3 TSL 5 BASIC13.53□□□□□ -0.24
Hmgb3O54879 Tnks1bp1-202ENSMUST00000111605 5747 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Hmgb3O54879 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Hmgb3O54879 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
Hmgb3O54879 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Hmgb3O54879 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
Hmgb3O54879 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Hmgb3O54879 Esr1-204ENSMUST00000105590 6339 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Hmgb3O54879 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
Hmgb3O54879 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 22.3 ms