Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Gm11539-201ENSMUST00000119837 557 ntBASIC15.52■□□□□ 0.08
Clk3O35492 Gm13436-201ENSMUST00000120418 567 ntBASIC15.52■□□□□ 0.08
Clk3O35492 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC15.52■□□□□ 0.08
Clk3O35492 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC15.52■□□□□ 0.08
Clk3O35492 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
Clk3O35492 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Clk3O35492 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Clk3O35492 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Clk3O35492 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Clk3O35492 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Clk3O35492 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Clk3O35492 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Clk3O35492 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Clk3O35492 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Clk3O35492 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
Clk3O35492 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Clk3O35492 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Clk3O35492 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
Clk3O35492 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC15.52■□□□□ 0.07
Clk3O35492 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Clk3O35492 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Clk3O35492 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
Clk3O35492 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC15.51■□□□□ 0.07
Clk3O35492 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Clk3O35492 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Clk3O35492 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Clk3O35492 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
Clk3O35492 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Clk3O35492 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Clk3O35492 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Clk3O35492 Gm15565-201ENSMUST00000118890 427 ntBASIC15.51■□□□□ 0.07
Clk3O35492 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC15.51■□□□□ 0.07
Clk3O35492 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Clk3O35492 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Clk3O35492 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
Clk3O35492 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Clk3O35492 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Clk3O35492 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Clk3O35492 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC15.51■□□□□ 0.07
Clk3O35492 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Clk3O35492 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Clk3O35492 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Clk3O35492 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Clk3O35492 AC133083.1-201ENSMUST00000221736 2209 ntBASIC15.51■□□□□ 0.07
Clk3O35492 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Clk3O35492 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Clk3O35492 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Clk3O35492 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Clk3O35492 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
Clk3O35492 Galnt18-202ENSMUST00000106663 2530 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Clk3O35492 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC15.5■□□□□ 0.07
Clk3O35492 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC15.5■□□□□ 0.07
Clk3O35492 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
Clk3O35492 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Clk3O35492 Gm16061-201ENSMUST00000122167 857 ntBASIC15.5■□□□□ 0.07
Clk3O35492 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC15.5■□□□□ 0.07
Clk3O35492 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
Clk3O35492 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC15.5■□□□□ 0.07
Clk3O35492 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC15.5■□□□□ 0.07
Clk3O35492 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC15.5■□□□□ 0.07
Clk3O35492 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Clk3O35492 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Clk3O35492 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Clk3O35492 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Clk3O35492 Cd151-203ENSMUST00000177840 1708 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
Clk3O35492 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Clk3O35492 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Clk3O35492 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Clk3O35492 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Clk3O35492 AL590614.2-201ENSMUST00000225374 1937 ntBASIC15.5■□□□□ 0.07
Clk3O35492 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
Clk3O35492 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC15.5■□□□□ 0.07
Clk3O35492 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Clk3O35492 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Clk3O35492 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
Clk3O35492 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Clk3O35492 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Clk3O35492 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Clk3O35492 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Clk3O35492 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
Clk3O35492 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Clk3O35492 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Clk3O35492 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Clk3O35492 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Clk3O35492 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Clk3O35492 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
Clk3O35492 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
Clk3O35492 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Clk3O35492 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
Clk3O35492 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
Clk3O35492 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Clk3O35492 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
Clk3O35492 Dlg5-202ENSMUST00000073687 7784 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Clk3O35492 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Clk3O35492 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC15.49■□□□□ 0.07
Clk3O35492 Gm13559-201ENSMUST00000120476 863 ntBASIC15.49■□□□□ 0.07
Clk3O35492 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
Clk3O35492 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC15.49■□□□□ 0.07
Clk3O35492 Gm43799-201ENSMUST00000201845 579 ntBASIC15.49■□□□□ 0.07
Clk3O35492 AC153881.2-201ENSMUST00000214877 204 ntBASIC15.49■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 27 ms