Protein–RNA interactions for Protein: Q6T3U4

Npc1l1, Niemann-Pick C1-like protein 1, mousemouse

Predictions only

Length 1,333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Npc1l1Q6T3U4 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
Npc1l1Q6T3U4 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
Npc1l1Q6T3U4 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC28.2■■■□□ 2.11
Npc1l1Q6T3U4 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC28.2■■■□□ 2.11
Npc1l1Q6T3U4 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
Npc1l1Q6T3U4 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
Npc1l1Q6T3U4 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
Npc1l1Q6T3U4 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
Npc1l1Q6T3U4 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC28.19■■■□□ 2.1
Npc1l1Q6T3U4 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC28.19■■■□□ 2.1
Npc1l1Q6T3U4 Gm37847-201ENSMUST00000192163 1497 ntBASIC28.18■■■□□ 2.1
Npc1l1Q6T3U4 Gm31748-201ENSMUST00000194938 1497 ntBASIC28.18■■■□□ 2.1
Npc1l1Q6T3U4 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
Npc1l1Q6T3U4 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
Npc1l1Q6T3U4 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
Npc1l1Q6T3U4 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC28.17■■■□□ 2.1
Npc1l1Q6T3U4 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC28.17■■■□□ 2.1
Npc1l1Q6T3U4 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC28.16■■■□□ 2.1
Npc1l1Q6T3U4 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
Npc1l1Q6T3U4 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
Npc1l1Q6T3U4 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
Npc1l1Q6T3U4 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
Npc1l1Q6T3U4 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
Npc1l1Q6T3U4 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
Npc1l1Q6T3U4 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
Npc1l1Q6T3U4 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
Npc1l1Q6T3U4 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
Npc1l1Q6T3U4 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
Npc1l1Q6T3U4 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
Npc1l1Q6T3U4 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
Npc1l1Q6T3U4 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
Npc1l1Q6T3U4 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
Npc1l1Q6T3U4 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC28.11■■■□□ 2.09
Npc1l1Q6T3U4 AC154454.1-201ENSMUST00000225253 216 ntBASIC28.11■■■□□ 2.09
Npc1l1Q6T3U4 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
Npc1l1Q6T3U4 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
Npc1l1Q6T3U4 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC28.1■■■□□ 2.09
Npc1l1Q6T3U4 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
Npc1l1Q6T3U4 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC28.1■■■□□ 2.09
Npc1l1Q6T3U4 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
Npc1l1Q6T3U4 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
Npc1l1Q6T3U4 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
Npc1l1Q6T3U4 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
Npc1l1Q6T3U4 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
Npc1l1Q6T3U4 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC28.08■■■□□ 2.09
Npc1l1Q6T3U4 Gm14121-201ENSMUST00000121441 1380 ntBASIC28.08■■■□□ 2.09
Npc1l1Q6T3U4 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
Npc1l1Q6T3U4 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
Npc1l1Q6T3U4 Scarna2-201ENSMUST00000157560 414 ntBASIC28.07■■■□□ 2.08
Npc1l1Q6T3U4 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC28.07■■■□□ 2.08
Npc1l1Q6T3U4 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
Npc1l1Q6T3U4 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC28.06■■■□□ 2.08
Npc1l1Q6T3U4 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
Npc1l1Q6T3U4 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC28.05■■■□□ 2.08
Npc1l1Q6T3U4 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
Npc1l1Q6T3U4 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC28.03■■■□□ 2.08
Npc1l1Q6T3U4 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC28.03■■■□□ 2.08
Npc1l1Q6T3U4 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC28.03■■■□□ 2.08
Npc1l1Q6T3U4 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
Npc1l1Q6T3U4 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC28.03■■■□□ 2.08
Npc1l1Q6T3U4 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC28.01■■■□□ 2.07
Npc1l1Q6T3U4 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC28.01■■■□□ 2.07
Npc1l1Q6T3U4 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
Npc1l1Q6T3U4 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
Npc1l1Q6T3U4 Gm13889-201ENSMUST00000099689 1386 ntBASIC27.98■■■□□ 2.07
Npc1l1Q6T3U4 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC27.97■■■□□ 2.07
Npc1l1Q6T3U4 Mir3960-201ENSMUST00000198213 73 ntBASIC27.97■■■□□ 2.07
Npc1l1Q6T3U4 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC27.97■■■□□ 2.07
Npc1l1Q6T3U4 Gm9806-201ENSMUST00000051080 552 ntBASIC27.97■■■□□ 2.07
Npc1l1Q6T3U4 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
Npc1l1Q6T3U4 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
Npc1l1Q6T3U4 Gm4799-201ENSMUST00000095396 657 ntBASIC27.97■■■□□ 2.07
Npc1l1Q6T3U4 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
Npc1l1Q6T3U4 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC27.97■■■□□ 2.07
Npc1l1Q6T3U4 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
Npc1l1Q6T3U4 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC27.95■■■□□ 2.07
Npc1l1Q6T3U4 Gm11687-201ENSMUST00000118911 886 ntBASIC27.95■■■□□ 2.07
Npc1l1Q6T3U4 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC27.95■■■□□ 2.06
Npc1l1Q6T3U4 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
Npc1l1Q6T3U4 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC27.93■■■□□ 2.06
Npc1l1Q6T3U4 Gm16437-201ENSMUST00000025669 507 ntBASIC27.93■■■□□ 2.06
Npc1l1Q6T3U4 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
Npc1l1Q6T3U4 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
Npc1l1Q6T3U4 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC27.93■■■□□ 2.06
Npc1l1Q6T3U4 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
Npc1l1Q6T3U4 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC27.92■■■□□ 2.06
Npc1l1Q6T3U4 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC27.92■■■□□ 2.06
Npc1l1Q6T3U4 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
Npc1l1Q6T3U4 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
Npc1l1Q6T3U4 Gm45364-201ENSMUST00000210883 159 ntBASIC27.92■■■□□ 2.06
Npc1l1Q6T3U4 Pkd1-207ENSMUST00000228550 1050 ntBASIC27.92■■■□□ 2.06
Npc1l1Q6T3U4 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
Npc1l1Q6T3U4 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC27.91■■■□□ 2.06
Npc1l1Q6T3U4 Gm12366-201ENSMUST00000121722 873 ntBASIC27.91■■■□□ 2.06
Npc1l1Q6T3U4 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC27.91■■■□□ 2.06
Npc1l1Q6T3U4 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
Npc1l1Q6T3U4 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC27.91■■■□□ 2.06
Npc1l1Q6T3U4 Gm5786-201ENSMUST00000085368 882 ntBASIC27.91■■■□□ 2.06
Npc1l1Q6T3U4 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC27.9■■■□□ 2.06
Npc1l1Q6T3U4 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC27.9■■■□□ 2.06
Retrieved 100 of 76,532 protein–RNA pairs in 19.6 ms