Protein–RNA interactions for Protein: O35188

Cx3cl1, Fractalkine, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cx3cl1O35188 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Cx3cl1O35188 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Cx3cl1O35188 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Cx3cl1O35188 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Cx3cl1O35188 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Cx3cl1O35188 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
Cx3cl1O35188 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Cx3cl1O35188 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Cx3cl1O35188 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Cx3cl1O35188 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Cx3cl1O35188 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Cx3cl1O35188 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Cx3cl1O35188 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Cx3cl1O35188 Gm5987-201ENSMUST00000196433 1151 ntBASIC21.69■■□□□ 1.06
Cx3cl1O35188 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Cx3cl1O35188 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Cx3cl1O35188 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Cx3cl1O35188 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
Cx3cl1O35188 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Cx3cl1O35188 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Cx3cl1O35188 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Cx3cl1O35188 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Cx3cl1O35188 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
Cx3cl1O35188 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
Cx3cl1O35188 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Cx3cl1O35188 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Cx3cl1O35188 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Cx3cl1O35188 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Cx3cl1O35188 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
Cx3cl1O35188 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC21.63■■□□□ 1.05
Cx3cl1O35188 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Cx3cl1O35188 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC21.63■■□□□ 1.05
Cx3cl1O35188 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Cx3cl1O35188 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Cx3cl1O35188 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Cx3cl1O35188 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
Cx3cl1O35188 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
Cx3cl1O35188 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Cx3cl1O35188 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Cx3cl1O35188 AC153890.1-201ENSMUST00000220021 2469 ntBASIC21.61■■□□□ 1.05
Cx3cl1O35188 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Cx3cl1O35188 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Cx3cl1O35188 Gm14121-201ENSMUST00000121441 1380 ntBASIC21.59■■□□□ 1.05
Cx3cl1O35188 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
Cx3cl1O35188 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Cx3cl1O35188 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Cx3cl1O35188 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
Cx3cl1O35188 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Cx3cl1O35188 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Cx3cl1O35188 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC21.56■■□□□ 1.04
Cx3cl1O35188 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Cx3cl1O35188 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
Cx3cl1O35188 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
Cx3cl1O35188 Gm4799-201ENSMUST00000095396 657 ntBASIC21.55■■□□□ 1.04
Cx3cl1O35188 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC21.55■■□□□ 1.04
Cx3cl1O35188 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
Cx3cl1O35188 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC21.55■■□□□ 1.04
Cx3cl1O35188 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC21.55■■□□□ 1.04
Cx3cl1O35188 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Cx3cl1O35188 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC21.54■■□□□ 1.04
Cx3cl1O35188 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Cx3cl1O35188 AC167019.3-201ENSMUST00000228225 1266 ntBASIC21.54■■□□□ 1.04
Cx3cl1O35188 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
Cx3cl1O35188 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
Cx3cl1O35188 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC21.53■■□□□ 1.04
Cx3cl1O35188 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Cx3cl1O35188 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
Cx3cl1O35188 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
Cx3cl1O35188 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Cx3cl1O35188 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Cx3cl1O35188 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
Cx3cl1O35188 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Cx3cl1O35188 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Cx3cl1O35188 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC21.5■■□□□ 1.03
Cx3cl1O35188 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Cx3cl1O35188 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC21.5■■□□□ 1.03
Cx3cl1O35188 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC21.5■■□□□ 1.03
Cx3cl1O35188 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
Cx3cl1O35188 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Cx3cl1O35188 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
Cx3cl1O35188 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
Cx3cl1O35188 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Cx3cl1O35188 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Cx3cl1O35188 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
Cx3cl1O35188 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC21.47■■□□□ 1.03
Cx3cl1O35188 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Cx3cl1O35188 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
Cx3cl1O35188 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Cx3cl1O35188 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Cx3cl1O35188 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Cx3cl1O35188 Gm13889-201ENSMUST00000099689 1386 ntBASIC21.47■■□□□ 1.03
Cx3cl1O35188 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
Cx3cl1O35188 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
Cx3cl1O35188 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
Cx3cl1O35188 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Cx3cl1O35188 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC21.45■■□□□ 1.02
Cx3cl1O35188 Mir3960-201ENSMUST00000198213 73 ntBASIC21.45■■□□□ 1.02
Cx3cl1O35188 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Cx3cl1O35188 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Cx3cl1O35188 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
Retrieved 100 of 76,532 protein–RNA pairs in 32 ms