Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 CKS1BP5-201ENST00000434172 273 ntBASIC3.3□□□□□ -1.88
SIX2Q9NPC8 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
SIX2Q9NPC8 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC3.3□□□□□ -1.88
SIX2Q9NPC8 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.3□□□□□ -1.88
SIX2Q9NPC8 VN1R34P-201ENST00000447387 883 ntBASIC3.3□□□□□ -1.88
SIX2Q9NPC8 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC3.3□□□□□ -1.88
SIX2Q9NPC8 MTND1P27-201ENST00000451117 902 ntBASIC3.3□□□□□ -1.88
SIX2Q9NPC8 AL136097.1-201ENST00000456945 913 ntBASIC3.3□□□□□ -1.88
SIX2Q9NPC8 snoU13.8-201ENST00000458890 104 ntBASIC3.3□□□□□ -1.88
SIX2Q9NPC8 AC146507.1-201ENST00000468335 354 ntBASIC3.3□□□□□ -1.88
SIX2Q9NPC8 AC011825.1-201ENST00000484967 388 ntBASIC3.3□□□□□ -1.88
SIX2Q9NPC8 AC112204.1-201ENST00000502591 103 ntBASIC3.3□□□□□ -1.88
SIX2Q9NPC8 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC3.3□□□□□ -1.88
SIX2Q9NPC8 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC3.3□□□□□ -1.88
SIX2Q9NPC8 AC109464.2-201ENST00000510242 943 ntBASIC3.3□□□□□ -1.88
SIX2Q9NPC8 PHBP14-201ENST00000512887 367 ntBASIC3.3□□□□□ -1.88
SIX2Q9NPC8 RNU6-720P-201ENST00000516363 108 ntBASIC3.3□□□□□ -1.88
SIX2Q9NPC8 AP003385.6-201ENST00000531603 374 ntBASIC3.3□□□□□ -1.88
SIX2Q9NPC8 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC3.3□□□□□ -1.88
SIX2Q9NPC8 EEF1B2P4-201ENST00000551398 348 ntBASIC3.3□□□□□ -1.88
SIX2Q9NPC8 CBX3P5-201ENST00000552017 521 ntBASIC3.3□□□□□ -1.88
SIX2Q9NPC8 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC3.3□□□□□ -1.88
SIX2Q9NPC8 ZNF519P3-201ENST00000557158 1032 ntBASIC3.3□□□□□ -1.88
SIX2Q9NPC8 MIR4528-201ENST00000577763 90 ntBASIC3.3□□□□□ -1.88
SIX2Q9NPC8 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.3□□□□□ -1.88
SIX2Q9NPC8 BNIP3P8-201ENST00000597863 560 ntBASIC3.3□□□□□ -1.88
SIX2Q9NPC8 LLPHP1-201ENST00000603571 367 ntBASIC3.3□□□□□ -1.88
SIX2Q9NPC8 AC080078.2-201ENST00000603766 501 ntBASIC3.3□□□□□ -1.88
SIX2Q9NPC8 AC004853.1-201ENST00000604902 698 ntBASIC3.3□□□□□ -1.88
SIX2Q9NPC8 NDUFA8P1-201ENST00000605525 367 ntBASIC3.3□□□□□ -1.88
SIX2Q9NPC8 AC131902.3-201ENST00000611767 581 ntBASIC3.3□□□□□ -1.88
SIX2Q9NPC8 AL589743.7-201ENST00000612637 233 ntBASIC3.3□□□□□ -1.88
SIX2Q9NPC8 AC099842.1-201ENST00000619919 596 ntBASIC3.3□□□□□ -1.88
SIX2Q9NPC8 AC007318.2-201ENST00000620999 243 ntBASIC3.3□□□□□ -1.88
SIX2Q9NPC8 MIR622-201ENST00000638396 96 ntBASIC3.3□□□□□ -1.88
SIX2Q9NPC8 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.3□□□□□ -1.88
SIX2Q9NPC8 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.3□□□□□ -1.88
SIX2Q9NPC8 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.3□□□□□ -1.88
SIX2Q9NPC8 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
SIX2Q9NPC8 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.29□□□□□ -1.88
SIX2Q9NPC8 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.29□□□□□ -1.88
SIX2Q9NPC8 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
SIX2Q9NPC8 RNU6-1279P-201ENST00000383917 103 ntBASIC3.29□□□□□ -1.88
SIX2Q9NPC8 SNORD15B-201ENST00000384714 146 ntBASIC3.29□□□□□ -1.88
SIX2Q9NPC8 RNU6-821P-201ENST00000390995 107 ntBASIC3.29□□□□□ -1.88
SIX2Q9NPC8 RPS20P2-201ENST00000402520 389 ntBASIC3.29□□□□□ -1.88
SIX2Q9NPC8 RNU2-66P-201ENST00000410650 161 ntBASIC3.29□□□□□ -1.88
SIX2Q9NPC8 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC3.29□□□□□ -1.88
SIX2Q9NPC8 USP9YP13-201ENST00000417797 480 ntBASIC3.29□□□□□ -1.88
SIX2Q9NPC8 AIMP1P1-201ENST00000418670 937 ntBASIC3.29□□□□□ -1.88
SIX2Q9NPC8 AC006548.1-201ENST00000427470 102 ntBASIC3.29□□□□□ -1.88
SIX2Q9NPC8 LAMTOR3P1-201ENST00000428620 370 ntBASIC3.29□□□□□ -1.88
SIX2Q9NPC8 YME1L1P1-201ENST00000429435 297 ntBASIC3.29□□□□□ -1.88
SIX2Q9NPC8 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC3.29□□□□□ -1.88
SIX2Q9NPC8 MTND1P34-201ENST00000438556 671 ntBASIC3.29□□□□□ -1.88
SIX2Q9NPC8 PGBD4P3-201ENST00000440731 581 ntBASIC3.29□□□□□ -1.88
SIX2Q9NPC8 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC3.29□□□□□ -1.88
SIX2Q9NPC8 AL353691.1-201ENST00000451332 387 ntBASIC3.29□□□□□ -1.88
SIX2Q9NPC8 AL033528.1-201ENST00000453780 140 ntBASIC3.29□□□□□ -1.88
SIX2Q9NPC8 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC3.29□□□□□ -1.88
SIX2Q9NPC8 AC007537.2-201ENST00000472093 511 ntBASIC3.29□□□□□ -1.88
SIX2Q9NPC8 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC3.29□□□□□ -1.88
SIX2Q9NPC8 LARP1BP2-201ENST00000486594 519 ntBASIC3.29□□□□□ -1.88
SIX2Q9NPC8 AC068305.1-201ENST00000497406 726 ntBASIC3.29□□□□□ -1.88
SIX2Q9NPC8 COX7A2P2-201ENST00000505291 250 ntBASIC3.29□□□□□ -1.88
SIX2Q9NPC8 CDC42P4-201ENST00000510507 563 ntBASIC3.29□□□□□ -1.88
SIX2Q9NPC8 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC3.29□□□□□ -1.88
SIX2Q9NPC8 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.29□□□□□ -1.88
SIX2Q9NPC8 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC3.29□□□□□ -1.88
SIX2Q9NPC8 AC025165.5-201ENST00000602802 578 ntBASIC3.29□□□□□ -1.88
SIX2Q9NPC8 AC091805.2-201ENST00000603848 235 ntBASIC3.29□□□□□ -1.88
SIX2Q9NPC8 AC004492.1-201ENST00000607036 742 ntBASIC3.29□□□□□ -1.88
SIX2Q9NPC8 AC006566.1-201ENST00000608943 513 ntBASIC3.29□□□□□ -1.88
SIX2Q9NPC8 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.29□□□□□ -1.88
SIX2Q9NPC8 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC3.29□□□□□ -1.88
SIX2Q9NPC8 AC108479.2-201ENST00000617314 601 ntBASIC3.29□□□□□ -1.88
SIX2Q9NPC8 AC099506.2-201ENST00000623074 221 ntBASIC3.29□□□□□ -1.88
SIX2Q9NPC8 CR381572.1-201ENST00000625098 102 ntBASIC3.29□□□□□ -1.88
SIX2Q9NPC8 AC099654.13-201ENST00000639774 207 ntBASIC3.29□□□□□ -1.88
SIX2Q9NPC8 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
SIX2Q9NPC8 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.29□□□□□ -1.88
SIX2Q9NPC8 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
SIX2Q9NPC8 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
SIX2Q9NPC8 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
SIX2Q9NPC8 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.28□□□□□ -1.88
SIX2Q9NPC8 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.28□□□□□ -1.88
SIX2Q9NPC8 RNU6-263P-201ENST00000363811 107 ntBASIC3.28□□□□□ -1.88
SIX2Q9NPC8 RNU6-359P-201ENST00000365466 108 ntBASIC3.28□□□□□ -1.88
SIX2Q9NPC8 MIR670-201ENST00000390142 98 ntBASIC3.28□□□□□ -1.88
SIX2Q9NPC8 RNU6ATAC34P-201ENST00000408879 121 ntBASIC3.28□□□□□ -1.88
SIX2Q9NPC8 Y_RNA.599-201ENST00000410489 109 ntBASIC3.28□□□□□ -1.88
SIX2Q9NPC8 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.28□□□□□ -1.88
SIX2Q9NPC8 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC3.28□□□□□ -1.88
SIX2Q9NPC8 MTCO1P21-201ENST00000416634 589 ntBASIC3.28□□□□□ -1.88
SIX2Q9NPC8 AL158156.1-201ENST00000422509 473 ntBASIC3.28□□□□□ -1.88
SIX2Q9NPC8 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC3.28□□□□□ -1.88
SIX2Q9NPC8 RPL23AP69-201ENST00000431134 458 ntBASIC3.28□□□□□ -1.88
SIX2Q9NPC8 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC3.28□□□□□ -1.88
SIX2Q9NPC8 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC3.28□□□□□ -1.88
SIX2Q9NPC8 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 143.3 ms