Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
USP43Q70EL4 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.5□□□□□ -1.85
USP43Q70EL4 SNRPEP3-201ENST00000338402 276 ntBASIC3.5□□□□□ -1.85
USP43Q70EL4 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.5□□□□□ -1.85
USP43Q70EL4 SNORA51.2-201ENST00000364595 132 ntBASIC3.5□□□□□ -1.85
USP43Q70EL4 ENSAP1-201ENST00000392855 326 ntBASIC3.5□□□□□ -1.85
USP43Q70EL4 SNRPEP2-201ENST00000397592 279 ntBASIC3.5□□□□□ -1.85
USP43Q70EL4 AL356432.1-201ENST00000405809 419 ntBASIC3.5□□□□□ -1.85
USP43Q70EL4 GSTA9P-201ENST00000406231 611 ntBASIC3.5□□□□□ -1.85
USP43Q70EL4 RN7SKP159-201ENST00000410657 292 ntBASIC3.5□□□□□ -1.85
USP43Q70EL4 AC083875.1-201ENST00000419509 405 ntBASIC3.5□□□□□ -1.85
USP43Q70EL4 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC3.5□□□□□ -1.85
USP43Q70EL4 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC3.5□□□□□ -1.85
USP43Q70EL4 AC006946.1-201ENST00000429106 328 ntBASIC3.5□□□□□ -1.85
USP43Q70EL4 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.5□□□□□ -1.85
USP43Q70EL4 AC109583.1-201ENST00000432156 268 ntBASIC3.5□□□□□ -1.85
USP43Q70EL4 AC114981.1-201ENST00000503897 678 ntBASIC3.5□□□□□ -1.85
USP43Q70EL4 NDUFB4P2-201ENST00000509515 391 ntBASIC3.5□□□□□ -1.85
USP43Q70EL4 AC108064.1-201ENST00000513791 460 ntBASIC3.5□□□□□ -1.85
USP43Q70EL4 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC3.5□□□□□ -1.85
USP43Q70EL4 RNA5SP49-201ENST00000516450 115 ntBASIC3.5□□□□□ -1.85
USP43Q70EL4 SNORA18.6-201ENST00000516792 115 ntBASIC3.5□□□□□ -1.85
USP43Q70EL4 RN7SKP283-201ENST00000517197 270 ntBASIC3.5□□□□□ -1.85
USP43Q70EL4 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC3.5□□□□□ -1.85
USP43Q70EL4 COX6B1P6-201ENST00000522347 255 ntBASIC3.5□□□□□ -1.85
USP43Q70EL4 RGS4-207ENST00000527809 817 ntTSL 4 BASIC3.5□□□□□ -1.85
USP43Q70EL4 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC3.5□□□□□ -1.85
USP43Q70EL4 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC3.5□□□□□ -1.85
USP43Q70EL4 ARL1-211ENST00000551828 776 ntTSL 5 BASIC3.5□□□□□ -1.85
USP43Q70EL4 AC078814.3-201ENST00000553036 491 ntBASIC3.5□□□□□ -1.85
USP43Q70EL4 AL355836.1-201ENST00000555951 870 ntBASIC3.5□□□□□ -1.85
USP43Q70EL4 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.5□□□□□ -1.85
USP43Q70EL4 AC025627.2-201ENST00000576220 160 ntBASIC3.5□□□□□ -1.85
USP43Q70EL4 AC053481.4-201ENST00000583164 216 ntBASIC3.5□□□□□ -1.85
USP43Q70EL4 MIR5684-201ENST00000585074 65 ntBASIC3.5□□□□□ -1.85
USP43Q70EL4 AC009977.1-201ENST00000586015 570 ntBASIC3.5□□□□□ -1.85
USP43Q70EL4 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.5□□□□□ -1.85
USP43Q70EL4 PRELID3BP8-201ENST00000604148 295 ntBASIC3.5□□□□□ -1.85
USP43Q70EL4 AC124303.1-201ENST00000605703 360 ntBASIC3.5□□□□□ -1.85
USP43Q70EL4 TTK-211ENST00000627129 240 ntTSL 5 BASIC3.5□□□□□ -1.85
USP43Q70EL4 CDRT1-208ENST00000630868 794 ntBASIC3.5□□□□□ -1.85
USP43Q70EL4 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC3.5□□□□□ -1.85
USP43Q70EL4 MIR3662-201ENST00000637030 95 ntBASIC3.5□□□□□ -1.85
USP43Q70EL4 MIR7153-201ENST00000637758 57 ntBASIC3.5□□□□□ -1.85
USP43Q70EL4 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
USP43Q70EL4 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.5□□□□□ -1.85
USP43Q70EL4 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
USP43Q70EL4 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
USP43Q70EL4 AC116667.1-201ENST00000604855 2072 ntBASIC3.5□□□□□ -1.85
USP43Q70EL4 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC3.5□□□□□ -1.85
USP43Q70EL4 AC138915.3-201ENST00000562908 1389 ntBASIC3.5□□□□□ -1.85
USP43Q70EL4 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC3.5□□□□□ -1.85
USP43Q70EL4 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
USP43Q70EL4 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC3.49□□□□□ -1.85
USP43Q70EL4 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.49□□□□□ -1.85
USP43Q70EL4 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.49□□□□□ -1.85
USP43Q70EL4 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.49□□□□□ -1.85
USP43Q70EL4 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.49□□□□□ -1.85
USP43Q70EL4 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
USP43Q70EL4 RNU6-845P-201ENST00000362578 103 ntBASIC3.49□□□□□ -1.85
USP43Q70EL4 SNORD56.2-201ENST00000363242 71 ntBASIC3.49□□□□□ -1.85
USP43Q70EL4 Y_RNA.216-201ENST00000364205 93 ntBASIC3.49□□□□□ -1.85
USP43Q70EL4 RNA5SP283-201ENST00000365604 119 ntBASIC3.49□□□□□ -1.85
USP43Q70EL4 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC3.49□□□□□ -1.85
USP43Q70EL4 RNU6-878P-201ENST00000384578 110 ntBASIC3.49□□□□□ -1.85
USP43Q70EL4 MIR670-201ENST00000390142 98 ntBASIC3.49□□□□□ -1.85
USP43Q70EL4 U8.14-201ENST00000390843 143 ntBASIC3.49□□□□□ -1.85
USP43Q70EL4 RNU6-272P-201ENST00000411028 104 ntBASIC3.49□□□□□ -1.85
USP43Q70EL4 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC3.49□□□□□ -1.85
USP43Q70EL4 AC234782.4-201ENST00000417646 1048 ntBASIC3.49□□□□□ -1.85
USP43Q70EL4 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC3.49□□□□□ -1.85
USP43Q70EL4 USP9YP27-201ENST00000418455 438 ntBASIC3.49□□□□□ -1.85
USP43Q70EL4 RPL31P45-201ENST00000419532 356 ntBASIC3.49□□□□□ -1.85
USP43Q70EL4 AL513185.2-201ENST00000425543 193 ntBASIC3.49□□□□□ -1.85
USP43Q70EL4 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC3.49□□□□□ -1.85
USP43Q70EL4 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC3.49□□□□□ -1.85
USP43Q70EL4 AC007389.2-201ENST00000434630 306 ntBASIC3.49□□□□□ -1.85
USP43Q70EL4 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC3.49□□□□□ -1.85
USP43Q70EL4 MTCO1P27-201ENST00000448269 226 ntBASIC3.49□□□□□ -1.85
USP43Q70EL4 MRPS31P2-201ENST00000451581 518 ntBASIC3.49□□□□□ -1.85
USP43Q70EL4 AC233279.1-201ENST00000455300 423 ntBASIC3.49□□□□□ -1.85
USP43Q70EL4 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC3.49□□□□□ -1.85
USP43Q70EL4 HMGB3P30-201ENST00000457863 606 ntBASIC3.49□□□□□ -1.85
USP43Q70EL4 AP000873.1-201ENST00000463987 400 ntBASIC3.49□□□□□ -1.85
USP43Q70EL4 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
USP43Q70EL4 ACTR3BP4-201ENST00000503033 1244 ntBASIC3.49□□□□□ -1.85
USP43Q70EL4 HMGB1P29-201ENST00000505659 499 ntBASIC3.49□□□□□ -1.85
USP43Q70EL4 AC093809.1-201ENST00000509155 340 ntBASIC3.49□□□□□ -1.85
USP43Q70EL4 AF131216.2-201ENST00000512316 564 ntBASIC3.49□□□□□ -1.85
USP43Q70EL4 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC3.49□□□□□ -1.85
USP43Q70EL4 AC099522.1-202ENST00000514718 367 ntBASIC3.49□□□□□ -1.85
USP43Q70EL4 RNU6-277P-201ENST00000516272 106 ntBASIC3.49□□□□□ -1.85
USP43Q70EL4 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC3.49□□□□□ -1.85
USP43Q70EL4 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.49□□□□□ -1.85
USP43Q70EL4 AC068587.4-201ENST00000533893 186 ntBASIC3.49□□□□□ -1.85
USP43Q70EL4 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC3.49□□□□□ -1.85
USP43Q70EL4 AC008011.1-201ENST00000545989 227 ntBASIC3.49□□□□□ -1.85
USP43Q70EL4 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC3.49□□□□□ -1.85
USP43Q70EL4 MIR4307-201ENST00000582802 84 ntBASIC3.49□□□□□ -1.85
USP43Q70EL4 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC3.49□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms