Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 SNORA60-201ENST00000362396 134 ntBASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 RNU6-960P-201ENST00000364056 120 ntBASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 Y_RNA.303-201ENST00000364998 94 ntBASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 SNORD3H-201ENST00000384486 214 ntBASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 MIR134-201ENST00000385258 73 ntBASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 AL136372.1-201ENST00000403060 228 ntBASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 SNORA3C-201ENST00000408792 125 ntBASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 RNU2-39P-201ENST00000410604 198 ntBASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 RN7SKP159-201ENST00000410657 292 ntBASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 RN7SKP27-201ENST00000410684 333 ntBASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 RNA5SP306-201ENST00000411087 107 ntBASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 MTCO3P12-201ENST00000416718 547 ntBASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 AC016691.1-201ENST00000441321 413 ntBASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 AL121877.1-201ENST00000453704 622 ntBASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 AC055876.1-202ENST00000567053 138 ntBASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 XIAPP1-201ENST00000603162 600 ntBASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 HMGN2P28-201ENST00000606102 262 ntBASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 AC025253.1-201ENST00000613623 543 ntBASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 AL450472.3-201ENST00000615578 367 ntBASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 AC138649.5-201ENST00000637456 137 ntBASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 MTND5P17-201ENST00000418405 1603 ntBASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 AC018555.1-201ENST00000567548 1980 ntBASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC3.94□□□□□ -1.78
PTCHD3Q3KNS1 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 Y_RNA.38-201ENST00000362617 102 ntBASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 RNA5SP502-201ENST00000362694 119 ntBASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 RNU5E-4P-201ENST00000364931 120 ntBASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 Y_RNA.367-201ENST00000365544 101 ntBASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 SNORA69-201ENST00000383895 132 ntBASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 MIR454-201ENST00000390180 115 ntBASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 RNU2-9P-201ENST00000410194 145 ntBASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 RNA5SP239-201ENST00000410218 129 ntBASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 RNA5SP118-201ENST00000410385 109 ntBASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 HSPE1P12-201ENST00000412576 301 ntBASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 RPL21P24-201ENST00000413752 448 ntBASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 UBE2FP1-201ENST00000416536 447 ntBASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 RPL7P2-201ENST00000427639 268 ntBASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 GTF2IP20-201ENST00000431663 360 ntBASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 AC004866.2-201ENST00000438285 481 ntBASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 BNIP3P2-201ENST00000441221 577 ntBASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 MTCO3P45-201ENST00000443036 613 ntBASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 SNRPGP6-201ENST00000451124 220 ntBASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 HMGB1P41-201ENST00000520234 440 ntBASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 AC123904.3-201ENST00000547218 814 ntBASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 ARL2BPP2-201ENST00000550907 489 ntBASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 AC060780.3-201ENST00000589464 80 ntBASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 AC010591.1-201ENST00000603941 649 ntBASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 AC004825.2-201ENST00000616634 455 ntBASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 AC092794.2-201ENST00000620933 563 ntBASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 YWHAEP7-203ENST00000622054 312 ntBASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC3.93□□□□□ -1.78
PTCHD3Q3KNS1 AL137003.2-201ENST00000606924 2538 ntBASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
PTCHD3Q3KNS1 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC3.92□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 129 ms