Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AL391646.1-201ENST00000603860 190 ntBASIC2.28□□□□□ -2.04
CUX1P39880 MIR6078-201ENST00000611069 100 ntBASIC2.28□□□□□ -2.04
CUX1P39880 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC2.28□□□□□ -2.05
CUX1P39880 RPL23AP47-201ENST00000408017 460 ntBASIC2.27□□□□□ -2.05
CUX1P39880 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC2.27□□□□□ -2.05
CUX1P39880 PSMA2P3-201ENST00000429685 675 ntBASIC2.27□□□□□ -2.05
CUX1P39880 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC2.27□□□□□ -2.05
CUX1P39880 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.27□□□□□ -2.05
CUX1P39880 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC2.27□□□□□ -2.05
CUX1P39880 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC2.27□□□□□ -2.05
CUX1P39880 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC2.27□□□□□ -2.05
CUX1P39880 AC011712.1-201ENST00000588959 234 ntBASIC2.27□□□□□ -2.05
CUX1P39880 AC091057.2-201ENST00000602594 792 ntBASIC2.27□□□□□ -2.05
CUX1P39880 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.27□□□□□ -2.05
CUX1P39880 Y_RNA.178-201ENST00000363832 102 ntBASIC2.27□□□□□ -2.05
CUX1P39880 Y_RNA.205-201ENST00000364128 113 ntBASIC2.27□□□□□ -2.05
CUX1P39880 RNA5SP189-201ENST00000364920 115 ntBASIC2.27□□□□□ -2.05
CUX1P39880 HSPE1P1-201ENST00000421494 318 ntBASIC2.27□□□□□ -2.05
CUX1P39880 AC022022.1-201ENST00000430304 178 ntBASIC2.27□□□□□ -2.05
CUX1P39880 MTND2P2-201ENST00000434633 945 ntBASIC2.27□□□□□ -2.05
CUX1P39880 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC2.27□□□□□ -2.05
CUX1P39880 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC2.27□□□□□ -2.05
CUX1P39880 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC2.27□□□□□ -2.05
CUX1P39880 AP003033.1-201ENST00000527244 415 ntBASIC2.27□□□□□ -2.05
CUX1P39880 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
CUX1P39880 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC2.27□□□□□ -2.05
CUX1P39880 AC112211.1-201ENST00000607832 305 ntTSL 3 BASIC2.27□□□□□ -2.05
CUX1P39880 RNU6-461P-201ENST00000364195 107 ntBASIC2.26□□□□□ -2.05
CUX1P39880 RNA5SP492-201ENST00000411330 114 ntBASIC2.26□□□□□ -2.05
CUX1P39880 RFESDP1-201ENST00000422350 461 ntBASIC2.26□□□□□ -2.05
CUX1P39880 AC073464.3-201ENST00000422564 712 ntBASIC2.26□□□□□ -2.05
CUX1P39880 AC093084.1-201ENST00000424233 687 ntBASIC2.26□□□□□ -2.05
CUX1P39880 AL512661.1-201ENST00000434586 1253 ntBASIC2.26□□□□□ -2.05
CUX1P39880 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.26□□□□□ -2.05
CUX1P39880 AC121758.2-201ENST00000553271 193 ntBASIC2.26□□□□□ -2.05
CUX1P39880 ANP32BP3-201ENST00000559213 706 ntBASIC2.26□□□□□ -2.05
CUX1P39880 MIR5694-201ENST00000581190 76 ntBASIC2.26□□□□□ -2.05
CUX1P39880 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC2.26□□□□□ -2.05
CUX1P39880 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.25□□□□□ -2.05
CUX1P39880 SUMO1P4-201ENST00000429430 302 ntBASIC2.25□□□□□ -2.05
CUX1P39880 Z85994.2-201ENST00000434327 452 ntBASIC2.25□□□□□ -2.05
CUX1P39880 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC2.25□□□□□ -2.05
CUX1P39880 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC2.25□□□□□ -2.05
CUX1P39880 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
CUX1P39880 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC2.24□□□□□ -2.05
CUX1P39880 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
CUX1P39880 RNU6-1080P-201ENST00000383982 107 ntBASIC2.24□□□□□ -2.05
CUX1P39880 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC2.24□□□□□ -2.05
CUX1P39880 COX6CP14-201ENST00000469580 174 ntBASIC2.24□□□□□ -2.05
CUX1P39880 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
CUX1P39880 AL359273.1-201ENST00000510918 627 ntBASIC2.24□□□□□ -2.05
CUX1P39880 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC2.24□□□□□ -2.05
CUX1P39880 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC2.24□□□□□ -2.05
CUX1P39880 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC2.24□□□□□ -2.05
CUX1P39880 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.24□□□□□ -2.05
CUX1P39880 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
CUX1P39880 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC2.23□□□□□ -2.05
CUX1P39880 RPL21P131-201ENST00000497298 483 ntBASIC2.23□□□□□ -2.05
CUX1P39880 AC008427.1-201ENST00000503102 655 ntBASIC2.23□□□□□ -2.05
CUX1P39880 Y_RNA.675-201ENST00000516389 149 ntBASIC2.23□□□□□ -2.05
CUX1P39880 SYF2P1-201ENST00000550658 413 ntBASIC2.23□□□□□ -2.05
CUX1P39880 AC005730.3-201ENST00000583067 366 ntBASIC2.23□□□□□ -2.05
CUX1P39880 MIR6788-201ENST00000618842 66 ntBASIC2.23□□□□□ -2.05
CUX1P39880 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC2.23□□□□□ -2.05
CUX1P39880 AP000560.1-201ENST00000624150 1937 ntBASIC2.23□□□□□ -2.05
CUX1P39880 RNA5SP363-201ENST00000365072 115 ntBASIC2.22□□□□□ -2.05
CUX1P39880 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC2.22□□□□□ -2.05
CUX1P39880 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
CUX1P39880 AC008885.2-201ENST00000509506 930 ntBASIC2.22□□□□□ -2.05
CUX1P39880 AF131216.2-201ENST00000512316 564 ntBASIC2.22□□□□□ -2.05
CUX1P39880 AP004607.1-201ENST00000524456 203 ntBASIC2.22□□□□□ -2.05
CUX1P39880 AC068338.1-201ENST00000565567 176 ntBASIC2.22□□□□□ -2.05
CUX1P39880 AC010928.2-201ENST00000588017 287 ntBASIC2.22□□□□□ -2.05
CUX1P39880 AC002487.1-201ENST00000604565 994 ntBASIC2.22□□□□□ -2.05
CUX1P39880 ICE2P2-201ENST00000483823 2787 ntBASIC2.22□□□□□ -2.05
CUX1P39880 MTND4P34-201ENST00000572715 1371 ntBASIC2.22□□□□□ -2.05
CUX1P39880 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC2.22□□□□□ -2.05
CUX1P39880 RNU1-52P-201ENST00000384190 164 ntBASIC2.22□□□□□ -2.05
CUX1P39880 AL445183.3-201ENST00000414168 502 ntBASIC2.22□□□□□ -2.05
CUX1P39880 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC2.22□□□□□ -2.05
CUX1P39880 DEFB122-201ENST00000433453 499 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
CUX1P39880 CALM1P1-201ENST00000442082 433 ntBASIC2.22□□□□□ -2.05
CUX1P39880 HMGN2P18-201ENST00000450680 270 ntBASIC2.22□□□□□ -2.05
CUX1P39880 RNA5SP61-201ENST00000516453 100 ntBASIC2.22□□□□□ -2.05
CUX1P39880 CA1-215ENST00000522389 551 ntTSL 3 BASIC2.22□□□□□ -2.05
CUX1P39880 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC2.22□□□□□ -2.05
CUX1P39880 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.22□□□□□ -2.05
CUX1P39880 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC2.22□□□□□ -2.05
CUX1P39880 AC091895.1-201ENST00000624494 256 ntBASIC2.22□□□□□ -2.05
CUX1P39880 AC116618.1-201ENST00000634617 774 ntBASIC2.22□□□□□ -2.05
CUX1P39880 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.22□□□□□ -2.05
CUX1P39880 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC2.21□□□□□ -2.06
CUX1P39880 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
CUX1P39880 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
CUX1P39880 RNU6ATAC20P-201ENST00000408436 127 ntBASIC2.21□□□□□ -2.06
CUX1P39880 MOB4-205ENST00000409916 829 ntTSL 3 BASIC2.21□□□□□ -2.06
CUX1P39880 AC006329.2-201ENST00000611491 394 ntBASIC2.21□□□□□ -2.06
CUX1P39880 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC2.21□□□□□ -2.06
CUX1P39880 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.2□□□□□ -2.06
CUX1P39880 AL136164.4-201ENST00000625013 2135 ntBASIC2.2□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms