Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
CLDN3O15551 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
CLDN3O15551 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
CLDN3O15551 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC2.99□□□□□ -1.93
CLDN3O15551 AP000526.1-201ENST00000603308 1388 ntBASIC2.99□□□□□ -1.93
CLDN3O15551 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
CLDN3O15551 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
CLDN3O15551 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
CLDN3O15551 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
CLDN3O15551 AL161781.1-201ENST00000354277 403 ntBASIC2.98□□□□□ -1.93
CLDN3O15551 RNU6-97P-201ENST00000363387 104 ntBASIC2.98□□□□□ -1.93
CLDN3O15551 RNU5E-10P-201ENST00000363506 118 ntBASIC2.98□□□□□ -1.93
CLDN3O15551 RNU6-343P-201ENST00000364709 104 ntBASIC2.98□□□□□ -1.93
CLDN3O15551 RNU6-198P-201ENST00000384258 104 ntBASIC2.98□□□□□ -1.93
CLDN3O15551 MIR514A1-201ENST00000385133 98 ntBASIC2.98□□□□□ -1.93
CLDN3O15551 AL360182.1-201ENST00000397433 468 ntBASIC2.98□□□□□ -1.93
CLDN3O15551 MIR1289-1-201ENST00000408836 144 ntBASIC2.98□□□□□ -1.93
CLDN3O15551 RN7SKP123-201ENST00000410732 291 ntBASIC2.98□□□□□ -1.93
CLDN3O15551 AL139281.1-201ENST00000422120 335 ntBASIC2.98□□□□□ -1.93
CLDN3O15551 PPP1R11P2-201ENST00000423543 382 ntBASIC2.98□□□□□ -1.93
CLDN3O15551 BX119904.4-201ENST00000424402 301 ntBASIC2.98□□□□□ -1.93
CLDN3O15551 AC093151.1-201ENST00000427711 313 ntBASIC2.98□□□□□ -1.93
CLDN3O15551 SAR1AP4-201ENST00000429225 591 ntBASIC2.98□□□□□ -1.93
CLDN3O15551 AL512844.2-201ENST00000433990 593 ntBASIC2.98□□□□□ -1.93
CLDN3O15551 TAAR7P-201ENST00000436141 242 ntBASIC2.98□□□□□ -1.93
CLDN3O15551 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC2.98□□□□□ -1.93
CLDN3O15551 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC2.98□□□□□ -1.93
CLDN3O15551 AC092798.1-201ENST00000458542 409 ntBASIC2.98□□□□□ -1.93
CLDN3O15551 AL049829.1-201ENST00000465411 156 ntBASIC2.98□□□□□ -1.93
CLDN3O15551 RPL31P50-201ENST00000471002 296 ntBASIC2.98□□□□□ -1.93
CLDN3O15551 AC004924.1-201ENST00000480160 781 ntBASIC2.98□□□□□ -1.93
CLDN3O15551 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC2.98□□□□□ -1.93
CLDN3O15551 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.98□□□□□ -1.93
CLDN3O15551 TTC39CP1-201ENST00000512513 755 ntBASIC2.98□□□□□ -1.93
CLDN3O15551 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC2.98□□□□□ -1.93
CLDN3O15551 RNA5SP356-201ENST00000515972 94 ntBASIC2.98□□□□□ -1.93
CLDN3O15551 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.98□□□□□ -1.93
CLDN3O15551 AP000857.1-201ENST00000532151 543 ntBASIC2.98□□□□□ -1.93
CLDN3O15551 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC2.98□□□□□ -1.93
CLDN3O15551 U73023.1-201ENST00000603134 700 ntBASIC2.98□□□□□ -1.93
CLDN3O15551 AC013553.2-201ENST00000604244 589 ntBASIC2.98□□□□□ -1.93
CLDN3O15551 AC007619.2-201ENST00000605743 379 ntBASIC2.98□□□□□ -1.93
CLDN3O15551 AC090132.2-201ENST00000615881 347 ntBASIC2.98□□□□□ -1.93
CLDN3O15551 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC2.98□□□□□ -1.93
CLDN3O15551 AC079597.1-201ENST00000624306 508 ntBASIC2.98□□□□□ -1.93
CLDN3O15551 SCARNA15.3-201ENST00000626315 122 ntBASIC2.98□□□□□ -1.93
CLDN3O15551 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC2.98□□□□□ -1.93
CLDN3O15551 SCARNA4.1-201ENST00000628597 123 ntBASIC2.98□□□□□ -1.93
CLDN3O15551 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC2.98□□□□□ -1.93
CLDN3O15551 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
CLDN3O15551 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
CLDN3O15551 IL33-203ENST00000456383 2501 ntTSL 5 BASIC2.97□□□□□ -1.93
CLDN3O15551 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
CLDN3O15551 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
CLDN3O15551 U8.9-201ENST00000365667 134 ntBASIC2.97□□□□□ -1.93
CLDN3O15551 SNORD88.1-201ENST00000408684 91 ntBASIC2.97□□□□□ -1.93
CLDN3O15551 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC2.97□□□□□ -1.93
CLDN3O15551 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC2.97□□□□□ -1.93
CLDN3O15551 RNU6-420P-201ENST00000458780 107 ntBASIC2.97□□□□□ -1.93
CLDN3O15551 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC2.97□□□□□ -1.93
CLDN3O15551 AC034159.1-201ENST00000513885 583 ntBASIC2.97□□□□□ -1.93
CLDN3O15551 RNU6-56P-201ENST00000516986 93 ntBASIC2.97□□□□□ -1.93
CLDN3O15551 AC021451.1-201ENST00000523498 1129 ntBASIC2.97□□□□□ -1.93
CLDN3O15551 DEFB131D-201ENST00000526803 184 ntBASIC2.97□□□□□ -1.93
CLDN3O15551 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC2.97□□□□□ -1.93
CLDN3O15551 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC2.97□□□□□ -1.93
CLDN3O15551 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC2.97□□□□□ -1.93
CLDN3O15551 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC2.97□□□□□ -1.93
CLDN3O15551 AC007954.1-201ENST00000554198 494 ntBASIC2.97□□□□□ -1.93
CLDN3O15551 HMGB1P14-201ENST00000557424 591 ntBASIC2.97□□□□□ -1.93
CLDN3O15551 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC2.97□□□□□ -1.93
CLDN3O15551 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC2.97□□□□□ -1.93
CLDN3O15551 OR4K7P-201ENST00000580232 945 ntBASIC2.97□□□□□ -1.93
CLDN3O15551 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC2.97□□□□□ -1.93
CLDN3O15551 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC2.97□□□□□ -1.93
CLDN3O15551 AC005046.1-201ENST00000608515 625 ntBASIC2.97□□□□□ -1.93
CLDN3O15551 AL121652.1-201ENST00000608851 448 ntBASIC2.97□□□□□ -1.93
CLDN3O15551 AC131235.4-201ENST00000609288 620 ntBASIC2.97□□□□□ -1.93
CLDN3O15551 AC069234.5-201ENST00000611056 416 ntBASIC2.97□□□□□ -1.93
CLDN3O15551 AC131902.3-201ENST00000611767 581 ntBASIC2.97□□□□□ -1.93
CLDN3O15551 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC2.97□□□□□ -1.93
CLDN3O15551 AC073308.1-201ENST00000623696 305 ntBASIC2.97□□□□□ -1.93
CLDN3O15551 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC2.97□□□□□ -1.93
CLDN3O15551 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
CLDN3O15551 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
CLDN3O15551 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.96□□□□□ -1.93
CLDN3O15551 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.96□□□□□ -1.94
CLDN3O15551 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC2.96□□□□□ -1.94
CLDN3O15551 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
CLDN3O15551 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
CLDN3O15551 RNU6-1078P-201ENST00000364522 103 ntBASIC2.96□□□□□ -1.94
CLDN3O15551 RNU6-1207P-201ENST00000384343 107 ntBASIC2.96□□□□□ -1.94
CLDN3O15551 SNORA26.7-201ENST00000391288 122 ntBASIC2.96□□□□□ -1.94
CLDN3O15551 RPL23AP29-201ENST00000397284 453 ntBASIC2.96□□□□□ -1.94
CLDN3O15551 AL512633.1-201ENST00000399931 655 ntBASIC2.96□□□□□ -1.94
CLDN3O15551 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
CLDN3O15551 RNA5SP344-201ENST00000411081 104 ntBASIC2.96□□□□□ -1.94
CLDN3O15551 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC2.96□□□□□ -1.94
CLDN3O15551 SPA17P1-201ENST00000416656 452 ntBASIC2.96□□□□□ -1.94
CLDN3O15551 NDUFB4P7-201ENST00000423198 363 ntBASIC2.96□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 110 ms