Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC2.14□□□□□ -2.07
USP54Q70EL1 AC233981.2-201ENST00000611524 1614 ntBASIC2.13□□□□□ -2.07
USP54Q70EL1 RNA5SP492-201ENST00000411330 114 ntBASIC2.13□□□□□ -2.07
USP54Q70EL1 RPS3AP9-201ENST00000417027 792 ntBASIC2.13□□□□□ -2.07
USP54Q70EL1 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC2.13□□□□□ -2.07
USP54Q70EL1 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
USP54Q70EL1 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC2.13□□□□□ -2.07
USP54Q70EL1 AC009238.1-201ENST00000442165 424 ntBASIC2.13□□□□□ -2.07
USP54Q70EL1 AC009237.6-201ENST00000446969 424 ntBASIC2.13□□□□□ -2.07
USP54Q70EL1 AC080013.2-201ENST00000460866 323 ntBASIC2.13□□□□□ -2.07
USP54Q70EL1 TOMM22P6-201ENST00000465035 409 ntBASIC2.13□□□□□ -2.07
USP54Q70EL1 AC092436.3-201ENST00000511788 257 ntBASIC2.13□□□□□ -2.07
USP54Q70EL1 OR4K8P-201ENST00000578842 1048 ntBASIC2.13□□□□□ -2.07
USP54Q70EL1 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC2.13□□□□□ -2.07
USP54Q70EL1 PIGFP3-201ENST00000441918 722 ntBASIC2.12□□□□□ -2.07
USP54Q70EL1 MOB1AP2-201ENST00000446060 614 ntBASIC2.12□□□□□ -2.07
USP54Q70EL1 AC010301.1-201ENST00000473936 355 ntBASIC2.12□□□□□ -2.07
USP54Q70EL1 AC108734.3-201ENST00000481241 1165 ntBASIC2.12□□□□□ -2.07
USP54Q70EL1 HMGB1P47-201ENST00000511281 589 ntBASIC2.12□□□□□ -2.07
USP54Q70EL1 AC109471.1-201ENST00000511631 612 ntBASIC2.12□□□□□ -2.07
USP54Q70EL1 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC2.12□□□□□ -2.07
USP54Q70EL1 AC133963.2-201ENST00000513686 578 ntBASIC2.12□□□□□ -2.07
USP54Q70EL1 AC084851.1-201ENST00000529105 249 ntBASIC2.12□□□□□ -2.07
USP54Q70EL1 AC087441.2-201ENST00000529141 262 ntBASIC2.12□□□□□ -2.07
USP54Q70EL1 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC2.12□□□□□ -2.07
USP54Q70EL1 AL161670.1-201ENST00000554348 137 ntBASIC2.12□□□□□ -2.07
USP54Q70EL1 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC2.12□□□□□ -2.07
USP54Q70EL1 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC2.12□□□□□ -2.07
USP54Q70EL1 RNU6-629P-201ENST00000384061 103 ntBASIC2.12□□□□□ -2.07
USP54Q70EL1 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC2.12□□□□□ -2.07
USP54Q70EL1 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC2.12□□□□□ -2.07
USP54Q70EL1 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC2.12□□□□□ -2.07
USP54Q70EL1 HMGN1P8-201ENST00000463578 288 ntBASIC2.12□□□□□ -2.07
USP54Q70EL1 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC2.12□□□□□ -2.07
USP54Q70EL1 AF279873.1-201ENST00000523393 313 ntBASIC2.12□□□□□ -2.07
USP54Q70EL1 AP003717.3-201ENST00000544832 1180 ntBASIC2.12□□□□□ -2.07
USP54Q70EL1 AC121758.2-201ENST00000553271 193 ntBASIC2.12□□□□□ -2.07
USP54Q70EL1 AC115085.1-201ENST00000588924 229 ntBASIC2.12□□□□□ -2.07
USP54Q70EL1 AC006249.1-201ENST00000621223 471 ntBASIC2.12□□□□□ -2.07
USP54Q70EL1 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC2.12□□□□□ -2.07
USP54Q70EL1 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
USP54Q70EL1 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
USP54Q70EL1 AL035405.1-201ENST00000400795 710 ntBASIC2.11□□□□□ -2.07
USP54Q70EL1 RNU6-174P-201ENST00000410406 106 ntBASIC2.11□□□□□ -2.07
USP54Q70EL1 AC109780.2-201ENST00000413467 845 ntBASIC2.11□□□□□ -2.07
USP54Q70EL1 CKS1BP5-201ENST00000434172 273 ntBASIC2.11□□□□□ -2.07
USP54Q70EL1 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC2.11□□□□□ -2.07
USP54Q70EL1 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC2.11□□□□□ -2.07
USP54Q70EL1 RPS29P29-201ENST00000456396 171 ntBASIC2.11□□□□□ -2.07
USP54Q70EL1 RNU1-123P-201ENST00000458950 160 ntBASIC2.11□□□□□ -2.07
USP54Q70EL1 AC104629.2-201ENST00000468627 598 ntBASIC2.11□□□□□ -2.07
USP54Q70EL1 AC021146.7-201ENST00000509604 775 ntBASIC2.11□□□□□ -2.07
USP54Q70EL1 RAC1P5-201ENST00000512182 576 ntBASIC2.11□□□□□ -2.07
USP54Q70EL1 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC2.11□□□□□ -2.07
USP54Q70EL1 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC2.11□□□□□ -2.07
USP54Q70EL1 DNAJC8P1-201ENST00000554535 372 ntBASIC2.11□□□□□ -2.07
USP54Q70EL1 AC013444.2-201ENST00000603317 787 ntBASIC2.11□□□□□ -2.07
USP54Q70EL1 YWHAQP7-201ENST00000603536 658 ntBASIC2.11□□□□□ -2.07
USP54Q70EL1 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC2.11□□□□□ -2.07
USP54Q70EL1 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC2.11□□□□□ -2.07
USP54Q70EL1 MIR6864-201ENST00000617935 70 ntBASIC2.11□□□□□ -2.07
USP54Q70EL1 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2.11□□□□□ -2.07
USP54Q70EL1 RNU6-60P-201ENST00000364792 103 ntBASIC2.1□□□□□ -2.07
USP54Q70EL1 RNU6-673P-201ENST00000365084 104 ntBASIC2.1□□□□□ -2.07
USP54Q70EL1 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.1□□□□□ -2.07
USP54Q70EL1 PPP1R2P5-201ENST00000457256 603 ntBASIC2.1□□□□□ -2.07
USP54Q70EL1 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
USP54Q70EL1 AC007115.1-201ENST00000546853 234 ntBASIC2.1□□□□□ -2.07
USP54Q70EL1 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC2.1□□□□□ -2.07
USP54Q70EL1 AC024614.2-201ENST00000577584 372 ntBASIC2.1□□□□□ -2.07
USP54Q70EL1 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC2.1□□□□□ -2.07
USP54Q70EL1 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC2.1□□□□□ -2.07
USP54Q70EL1 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC2.1□□□□□ -2.07
USP54Q70EL1 ZNF33BP1-201ENST00000452497 1834 ntBASIC2.1□□□□□ -2.07
USP54Q70EL1 DEFB135-201ENST00000382208 234 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
USP54Q70EL1 RNU6-1181P-201ENST00000384191 106 ntBASIC2.09□□□□□ -2.07
USP54Q70EL1 RNU4-31P-201ENST00000384211 141 ntBASIC2.09□□□□□ -2.07
USP54Q70EL1 SUMO2P12-201ENST00000405924 140 ntBASIC2.09□□□□□ -2.07
USP54Q70EL1 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC2.09□□□□□ -2.07
USP54Q70EL1 PSMA2P3-201ENST00000429685 675 ntBASIC2.09□□□□□ -2.07
USP54Q70EL1 SNORD116-30-201ENST00000516468 85 ntBASIC2.09□□□□□ -2.07
USP54Q70EL1 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC2.09□□□□□ -2.07
USP54Q70EL1 AC019159.1-201ENST00000605094 187 ntBASIC2.09□□□□□ -2.07
USP54Q70EL1 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC2.09□□□□□ -2.08
USP54Q70EL1 RNU6-50P-201ENST00000362356 103 ntBASIC2.09□□□□□ -2.08
USP54Q70EL1 RNA5SP391-201ENST00000363456 119 ntBASIC2.09□□□□□ -2.08
USP54Q70EL1 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC2.09□□□□□ -2.08
USP54Q70EL1 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC2.09□□□□□ -2.08
USP54Q70EL1 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC2.09□□□□□ -2.08
USP54Q70EL1 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC2.09□□□□□ -2.08
USP54Q70EL1 HSPE1P1-201ENST00000421494 318 ntBASIC2.09□□□□□ -2.08
USP54Q70EL1 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC2.09□□□□□ -2.08
USP54Q70EL1 AC084149.2-201ENST00000438443 797 ntTSL 5 BASIC2.09□□□□□ -2.08
USP54Q70EL1 XKRYP6-201ENST00000440468 1116 ntBASIC2.09□□□□□ -2.08
USP54Q70EL1 XKRYP3-201ENST00000442113 1116 ntBASIC2.09□□□□□ -2.08
USP54Q70EL1 HMGN2P13-201ENST00000476476 274 ntBASIC2.09□□□□□ -2.08
USP54Q70EL1 NCOR1P1-202ENST00000486162 291 ntBASIC2.09□□□□□ -2.08
USP54Q70EL1 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC2.09□□□□□ -2.08
USP54Q70EL1 RNA5SP102-201ENST00000516865 106 ntBASIC2.09□□□□□ -2.08
USP54Q70EL1 AC091057.2-201ENST00000602594 792 ntBASIC2.09□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 97.6 ms