Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC1.08□□□□□ -2.24
PRKDCP78527 RNA5SP121-201ENST00000516537 101 ntBASIC1.08□□□□□ -2.24
PRKDCP78527 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC1.08□□□□□ -2.24
PRKDCP78527 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC1.08□□□□□ -2.24
PRKDCP78527 SULT1C2P1-202ENST00000562418 459 ntBASIC1.08□□□□□ -2.24
PRKDCP78527 Y_RNA.433-201ENST00000384089 102 ntBASIC1.07□□□□□ -2.24
PRKDCP78527 AC092638.1-201ENST00000411966 1275 ntBASIC1.07□□□□□ -2.24
PRKDCP78527 AC007560.1-201ENST00000426912 237 ntBASIC1.07□□□□□ -2.24
PRKDCP78527 RSL24D1P2-201ENST00000445584 366 ntBASIC1.07□□□□□ -2.24
PRKDCP78527 MTCO3P44-201ENST00000510977 541 ntBASIC1.07□□□□□ -2.24
PRKDCP78527 ZNF271P-202ENST00000465539 1970 ntBASIC1.07□□□□□ -2.24
PRKDCP78527 PABPC1P9-201ENST00000426076 1612 ntBASIC1.07□□□□□ -2.24
PRKDCP78527 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC1.07□□□□□ -2.24
PRKDCP78527 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC1.07□□□□□ -2.24
PRKDCP78527 WARS2P1-201ENST00000429678 537 ntBASIC1.07□□□□□ -2.24
PRKDCP78527 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC1.07□□□□□ -2.24
PRKDCP78527 RPL7P31-201ENST00000450192 724 ntBASIC1.07□□□□□ -2.24
PRKDCP78527 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC1.07□□□□□ -2.24
PRKDCP78527 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC1.07□□□□□ -2.24
PRKDCP78527 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC1.07□□□□□ -2.24
PRKDCP78527 VTA1P2-201ENST00000520205 911 ntBASIC1.07□□□□□ -2.24
PRKDCP78527 OR8X1P-201ENST00000534542 869 ntBASIC1.07□□□□□ -2.24
PRKDCP78527 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.07□□□□□ -2.24
PRKDCP78527 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC1.07□□□□□ -2.24
PRKDCP78527 AC110774.1-201ENST00000623567 2018 ntBASIC1.07□□□□□ -2.24
PRKDCP78527 XIAPP3-201ENST00000312918 795 ntBASIC1.07□□□□□ -2.24
PRKDCP78527 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC1.07□□□□□ -2.24
PRKDCP78527 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.07□□□□□ -2.24
PRKDCP78527 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC1.07□□□□□ -2.24
PRKDCP78527 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.07□□□□□ -2.24
PRKDCP78527 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC1.07□□□□□ -2.24
PRKDCP78527 FABP5P6-201ENST00000510588 409 ntBASIC1.07□□□□□ -2.24
PRKDCP78527 AC008837.2-201ENST00000513076 418 ntBASIC1.07□□□□□ -2.24
PRKDCP78527 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC1.07□□□□□ -2.24
PRKDCP78527 ZNF209P-201ENST00000593450 2304 ntBASIC1.06□□□□□ -2.24
PRKDCP78527 RLIMP2-201ENST00000427891 1563 ntBASIC1.06□□□□□ -2.24
PRKDCP78527 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC1.06□□□□□ -2.24
PRKDCP78527 AL596028.1-201ENST00000326971 197 ntBASIC1.06□□□□□ -2.24
PRKDCP78527 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC1.06□□□□□ -2.24
PRKDCP78527 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC1.06□□□□□ -2.24
PRKDCP78527 HMGB3P21-201ENST00000452483 547 ntBASIC1.06□□□□□ -2.24
PRKDCP78527 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC1.06□□□□□ -2.24
PRKDCP78527 AC000123.2-201ENST00000623124 461 ntBASIC1.06□□□□□ -2.24
PRKDCP78527 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC1.06□□□□□ -2.24
PRKDCP78527 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC1.06□□□□□ -2.24
PRKDCP78527 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
PRKDCP78527 Y_RNA.258-201ENST00000364613 105 ntBASIC1.06□□□□□ -2.24
PRKDCP78527 MIR320A-201ENST00000385302 82 ntBASIC1.06□□□□□ -2.24
PRKDCP78527 AL033519.2-201ENST00000403958 392 ntBASIC1.06□□□□□ -2.24
PRKDCP78527 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC1.06□□□□□ -2.24
PRKDCP78527 AC108059.3-201ENST00000456388 214 ntBASIC1.06□□□□□ -2.24
PRKDCP78527 AC092451.1-201ENST00000480211 153 ntBASIC1.06□□□□□ -2.24
PRKDCP78527 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC1.06□□□□□ -2.24
PRKDCP78527 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC1.06□□□□□ -2.24
PRKDCP78527 MTND5P4-201ENST00000514978 288 ntBASIC1.06□□□□□ -2.24
PRKDCP78527 SMARCE1P4-201ENST00000523647 241 ntBASIC1.06□□□□□ -2.24
PRKDCP78527 AL592494.3-201ENST00000609485 464 ntBASIC1.06□□□□□ -2.24
PRKDCP78527 CR382285.2-201ENST00000624662 1495 ntBASIC1.06□□□□□ -2.24
PRKDCP78527 AC114546.3-201ENST00000623582 1734 ntBASIC1.06□□□□□ -2.24
PRKDCP78527 RNU6-37P-201ENST00000362692 107 ntBASIC1.06□□□□□ -2.24
PRKDCP78527 RNU6-11P-201ENST00000364234 107 ntBASIC1.06□□□□□ -2.24
PRKDCP78527 HMGB3P10-201ENST00000434734 572 ntBASIC1.06□□□□□ -2.24
PRKDCP78527 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC1.06□□□□□ -2.24
PRKDCP78527 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC1.06□□□□□ -2.24
PRKDCP78527 AC084364.2-201ENST00000546924 395 ntBASIC1.06□□□□□ -2.24
PRKDCP78527 AC008127.2-201ENST00000549925 1075 ntBASIC1.06□□□□□ -2.24
PRKDCP78527 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC1.06□□□□□ -2.24
PRKDCP78527 C2orf27A-204ENST00000623058 969 ntBASIC1.06□□□□□ -2.24
PRKDCP78527 MIR4278-201ENST00000636094 69 ntBASIC1.06□□□□□ -2.24
PRKDCP78527 AC000367.1-201ENST00000452711 1766 ntBASIC1.06□□□□□ -2.24
PRKDCP78527 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC1.06□□□□□ -2.24
PRKDCP78527 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.06□□□□□ -2.24
PRKDCP78527 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.06□□□□□ -2.24
PRKDCP78527 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.06□□□□□ -2.24
PRKDCP78527 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.05□□□□□ -2.24
PRKDCP78527 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC1.05□□□□□ -2.24
PRKDCP78527 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC1.05□□□□□ -2.24
PRKDCP78527 RNU4-91P-201ENST00000364778 135 ntBASIC1.05□□□□□ -2.24
PRKDCP78527 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC1.05□□□□□ -2.24
PRKDCP78527 SETP8-201ENST00000435341 628 ntBASIC1.05□□□□□ -2.24
PRKDCP78527 AL031659.1-201ENST00000447075 539 ntBASIC1.05□□□□□ -2.24
PRKDCP78527 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC1.05□□□□□ -2.24
PRKDCP78527 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC1.05□□□□□ -2.24
PRKDCP78527 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC1.05□□□□□ -2.24
PRKDCP78527 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC1.05□□□□□ -2.24
PRKDCP78527 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC1.05□□□□□ -2.24
PRKDCP78527 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.05□□□□□ -2.24
PRKDCP78527 RNU6-1263P-201ENST00000384601 106 ntBASIC1.05□□□□□ -2.24
PRKDCP78527 AC109471.1-201ENST00000511631 612 ntBASIC1.05□□□□□ -2.24
PRKDCP78527 AC092451.2-201ENST00000538746 658 ntBASIC1.05□□□□□ -2.24
PRKDCP78527 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.05□□□□□ -2.24
PRKDCP78527 MIR6078-201ENST00000611069 100 ntBASIC1.05□□□□□ -2.24
PRKDCP78527 AL096701.2-201ENST00000416920 238 ntBASIC1.05□□□□□ -2.24
PRKDCP78527 AC099336.2-201ENST00000422457 254 ntBASIC1.05□□□□□ -2.24
PRKDCP78527 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC1.05□□□□□ -2.24
PRKDCP78527 USP9YP7-201ENST00000436723 430 ntBASIC1.05□□□□□ -2.24
PRKDCP78527 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC1.05□□□□□ -2.24
PRKDCP78527 USP9YP32-201ENST00000452432 430 ntBASIC1.05□□□□□ -2.24
PRKDCP78527 AC090515.1-201ENST00000465295 476 ntBASIC1.05□□□□□ -2.24
PRKDCP78527 HAUS1P1-201ENST00000505275 832 ntBASIC1.05□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 104.1 ms