Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC107954.1-201ENST00000565906 727 ntBASIC3.02□□□□□ -1.93
MSH6P52701 MIR3690-201ENST00000580266 75 ntBASIC3.02□□□□□ -1.93
MSH6P52701 AL451074.6-201ENST00000608512 729 ntBASIC3.02□□□□□ -1.93
MSH6P52701 U73479.1-201ENST00000618062 168 ntBASIC3.02□□□□□ -1.93
MSH6P52701 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
MSH6P52701 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.02□□□□□ -1.93
MSH6P52701 ZNF734P-201ENST00000419494 1534 ntBASIC3.02□□□□□ -1.93
MSH6P52701 AL136164.4-201ENST00000625013 2135 ntBASIC3.02□□□□□ -1.93
MSH6P52701 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.02□□□□□ -1.93
MSH6P52701 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.01□□□□□ -1.93
MSH6P52701 AL121978.1-201ENST00000402778 359 ntBASIC3.01□□□□□ -1.93
MSH6P52701 AL355615.1-201ENST00000406187 641 ntBASIC3.01□□□□□ -1.93
MSH6P52701 LAMTOR3P1-201ENST00000428620 370 ntBASIC3.01□□□□□ -1.93
MSH6P52701 RPL31P54-201ENST00000429803 370 ntBASIC3.01□□□□□ -1.93
MSH6P52701 RPS7P2-201ENST00000435134 607 ntBASIC3.01□□□□□ -1.93
MSH6P52701 AC245517.4-201ENST00000448601 281 ntBASIC3.01□□□□□ -1.93
MSH6P52701 AC008571.1-201ENST00000467232 300 ntBASIC3.01□□□□□ -1.93
MSH6P52701 SYPL1P1-201ENST00000473622 768 ntBASIC3.01□□□□□ -1.93
MSH6P52701 AC092902.1-201ENST00000486999 259 ntBASIC3.01□□□□□ -1.93
MSH6P52701 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC3.01□□□□□ -1.93
MSH6P52701 AC048346.1-201ENST00000510247 144 ntBASIC3.01□□□□□ -1.93
MSH6P52701 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC3.01□□□□□ -1.93
MSH6P52701 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC3.01□□□□□ -1.93
MSH6P52701 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC3.01□□□□□ -1.93
MSH6P52701 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC3.01□□□□□ -1.93
MSH6P52701 ZNF971P-201ENST00000562068 1249 ntBASIC3.01□□□□□ -1.93
MSH6P52701 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC3.01□□□□□ -1.93
MSH6P52701 SNORD39.3-201ENST00000584451 71 ntBASIC3.01□□□□□ -1.93
MSH6P52701 AC060766.3-201ENST00000591442 263 ntBASIC3.01□□□□□ -1.93
MSH6P52701 TPMTP1-201ENST00000592307 737 ntBASIC3.01□□□□□ -1.93
MSH6P52701 AC113368.1-201ENST00000603736 382 ntBASIC3.01□□□□□ -1.93
MSH6P52701 AC006023.2-201ENST00000609916 167 ntBASIC3.01□□□□□ -1.93
MSH6P52701 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC3.01□□□□□ -1.93
MSH6P52701 VN1R7P-201ENST00000619242 903 ntBASIC3.01□□□□□ -1.93
MSH6P52701 AL356266.1-201ENST00000623311 483 ntBASIC3.01□□□□□ -1.93
MSH6P52701 AL160394.1-201ENST00000624765 724 ntBASIC3.01□□□□□ -1.93
MSH6P52701 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC3.01□□□□□ -1.93
MSH6P52701 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC3.01□□□□□ -1.93
MSH6P52701 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
MSH6P52701 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
MSH6P52701 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC3.01□□□□□ -1.93
MSH6P52701 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
MSH6P52701 ZNF33BP1-201ENST00000452497 1834 ntBASIC3.01□□□□□ -1.93
MSH6P52701 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC3□□□□□ -1.93
MSH6P52701 MIR378A-201ENST00000362177 66 ntBASIC3□□□□□ -1.93
MSH6P52701 SNORA7.2-201ENST00000364446 145 ntBASIC3□□□□□ -1.93
MSH6P52701 RNU6-629P-201ENST00000384061 103 ntBASIC3□□□□□ -1.93
MSH6P52701 SNORD116-23-201ENST00000384645 92 ntBASIC3□□□□□ -1.93
MSH6P52701 MT-TC-201ENST00000387405 66 ntBASIC3□□□□□ -1.93
MSH6P52701 RNA5SP56-201ENST00000410277 118 ntBASIC3□□□□□ -1.93
MSH6P52701 AC013262.1-201ENST00000426710 252 ntBASIC3□□□□□ -1.93
MSH6P52701 Z82205.1-201ENST00000428456 297 ntBASIC3□□□□□ -1.93
MSH6P52701 AP000949.1-201ENST00000438328 629 ntBASIC3□□□□□ -1.93
MSH6P52701 AC009237.8-201ENST00000445492 379 ntBASIC3□□□□□ -1.93
MSH6P52701 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC3□□□□□ -1.93
MSH6P52701 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC3□□□□□ -1.93
MSH6P52701 AC104073.1-201ENST00000451988 151 ntBASIC3□□□□□ -1.93
MSH6P52701 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC3□□□□□ -1.93
MSH6P52701 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC3□□□□□ -1.93
MSH6P52701 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC3□□□□□ -1.93
MSH6P52701 NCOR1P1-202ENST00000486162 291 ntBASIC3□□□□□ -1.93
MSH6P52701 HMGB1P38-201ENST00000490557 577 ntBASIC3□□□□□ -1.93
MSH6P52701 AC093801.2-201ENST00000503966 1050 ntBASIC3□□□□□ -1.93
MSH6P52701 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC3□□□□□ -1.93
MSH6P52701 MTCO3P44-201ENST00000510977 541 ntBASIC3□□□□□ -1.93
MSH6P52701 TBCAP3-201ENST00000512475 312 ntBASIC3□□□□□ -1.93
MSH6P52701 PTK2-220ENST00000520151 573 ntTSL 4 BASIC3□□□□□ -1.93
MSH6P52701 AP003066.2-201ENST00000529375 555 ntBASIC3□□□□□ -1.93
MSH6P52701 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC3□□□□□ -1.93
MSH6P52701 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC3□□□□□ -1.93
MSH6P52701 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC3□□□□□ -1.93
MSH6P52701 MIR4666A-201ENST00000580160 79 ntBASIC3□□□□□ -1.93
MSH6P52701 VN1R80P-201ENST00000597126 338 ntBASIC3□□□□□ -1.93
MSH6P52701 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC3□□□□□ -1.93
MSH6P52701 AL645944.1-201ENST00000603857 493 ntBASIC3□□□□□ -1.93
MSH6P52701 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC3□□□□□ -1.93
MSH6P52701 AC009831.4-201ENST00000620744 325 ntBASIC3□□□□□ -1.93
MSH6P52701 AC002064.3-201ENST00000623448 346 ntBASIC3□□□□□ -1.93
MSH6P52701 AC006927.2-201ENST00000639256 389 ntBASIC3□□□□□ -1.93
MSH6P52701 MFSD8-245ENST00000641743 948 ntBASIC3□□□□□ -1.93
MSH6P52701 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC3□□□□□ -1.93
MSH6P52701 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC3□□□□□ -1.93
MSH6P52701 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC3□□□□□ -1.93
MSH6P52701 RNU6-251P-201ENST00000363235 104 ntBASIC3□□□□□ -1.93
MSH6P52701 RNU6-374P-201ENST00000364146 108 ntBASIC3□□□□□ -1.93
MSH6P52701 SNORA51.2-201ENST00000364595 132 ntBASIC3□□□□□ -1.93
MSH6P52701 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
MSH6P52701 AC027644.1-201ENST00000419595 298 ntBASIC3□□□□□ -1.93
MSH6P52701 RPL7P46-201ENST00000425129 740 ntBASIC3□□□□□ -1.93
MSH6P52701 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC3□□□□□ -1.93
MSH6P52701 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC3□□□□□ -1.93
MSH6P52701 AL034418.1-201ENST00000448675 860 ntBASIC3□□□□□ -1.93
MSH6P52701 AC104308.1-201ENST00000454621 333 ntBASIC3□□□□□ -1.93
MSH6P52701 AC015908.1-201ENST00000478739 476 ntBASIC3□□□□□ -1.93
MSH6P52701 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC3□□□□□ -1.93
MSH6P52701 RNA5SP135-201ENST00000517019 125 ntBASIC3□□□□□ -1.93
MSH6P52701 AP003467.2-201ENST00000520175 319 ntBASIC3□□□□□ -1.93
MSH6P52701 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC3□□□□□ -1.93
MSH6P52701 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC3□□□□□ -1.93
MSH6P52701 CYB5AP5-201ENST00000549779 389 ntBASIC3□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 110 ms