Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 RPL23AP11-201ENST00000475260 469 ntBASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 NDUFB5P1-201ENST00000508134 564 ntBASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 Y_RNA.680-201ENST00000516441 93 ntBASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 RN7SKP283-201ENST00000517197 270 ntBASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 AC103843.2-201ENST00000530523 682 ntBASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 AP000857.1-201ENST00000532151 543 ntBASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 AP001880.2-201ENST00000538233 448 ntBASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 MEG8-218ENST00000556720 456 ntTSL 3 BASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 HSPE1P3-201ENST00000559254 309 ntBASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 MIR4424-201ENST00000585257 86 ntBASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 BNIP3P25-201ENST00000596023 559 ntBASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 BBIP1P1-201ENST00000602999 279 ntBASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 AL391358.1-201ENST00000605342 190 ntBASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 AC211433.2-201ENST00000608433 387 ntBASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 AC098479.1-201ENST00000609225 154 ntBASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 AC141273.2-201ENST00000618989 130 ntBASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 AC087385.3-201ENST00000620477 187 ntBASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 PLCE1P1-201ENST00000622094 305 ntBASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 AL669831.3-213ENST00000636676 183 ntBASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 API5-210ENST00000534600 1760 ntTSL 5 BASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 A2MP1-204ENST00000566278 4130 ntBASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
CCDC39Q9UFE4 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 AL031119.1-201ENST00000404707 1879 ntBASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 RNU6-874P-201ENST00000362390 105 ntBASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 RNA5SP191-201ENST00000362585 102 ntBASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 Y_RNA.167-201ENST00000363735 109 ntBASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 SNORD74.4-201ENST00000364129 80 ntBASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 RNU6-343P-201ENST00000364709 104 ntBASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 RNU6-601P-201ENST00000384540 107 ntBASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 MIR513A2-201ENST00000385249 127 ntBASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 AL109941.1-201ENST00000401925 229 ntBASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 RN7SKP267-201ENST00000410381 285 ntBASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 RNA5SP113-201ENST00000410486 84 ntBASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 RN7SKP167-201ENST00000411047 285 ntBASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 RPL12P34-201ENST00000424532 479 ntBASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 OR4K11P-201ENST00000431829 904 ntBASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 RPS20P1-201ENST00000434853 354 ntBASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 AC005019.1-201ENST00000436455 431 ntBASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 GEMIN8P3-201ENST00000445417 720 ntBASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 GSTA11P-201ENST00000452866 669 ntBASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 RPL21P71-201ENST00000465598 459 ntBASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 RPL7L1P8-201ENST00000469911 741 ntBASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 AC092451.1-201ENST00000480211 153 ntBASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 RN7SL214P-201ENST00000487317 265 ntBASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 ALDH7A1P3-201ENST00000492517 345 ntBASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 AC079140.5-201ENST00000507882 310 ntBASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 AC006499.6-201ENST00000511169 607 ntBASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 RNU6-1038P-201ENST00000516516 104 ntBASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 AC109635.4-202ENST00000531666 412 ntBASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 OR8R1P-201ENST00000543943 764 ntBASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 OR4K8P-201ENST00000578842 1048 ntBASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 MIR3667-201ENST00000581025 74 ntBASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 SDAD1P1-202ENST00000524156 2051 ntBASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 ZNF734P-201ENST00000419494 1534 ntBASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC39Q9UFE4 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC39Q9UFE4 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
CCDC39Q9UFE4 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC39Q9UFE4 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC39Q9UFE4 BX323014.1-201ENST00000412876 237 ntBASIC5.27□□□□□ -1.57
CCDC39Q9UFE4 AC233981.1-201ENST00000423224 461 ntBASIC5.27□□□□□ -1.57
CCDC39Q9UFE4 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC5.27□□□□□ -1.57
CCDC39Q9UFE4 AC137499.1-201ENST00000427602 88 ntBASIC5.27□□□□□ -1.57
CCDC39Q9UFE4 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC5.27□□□□□ -1.57
CCDC39Q9UFE4 MTCO3P45-201ENST00000443036 613 ntBASIC5.27□□□□□ -1.57
CCDC39Q9UFE4 HSFY6P-201ENST00000445573 403 ntBASIC5.27□□□□□ -1.57
CCDC39Q9UFE4 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC5.27□□□□□ -1.57
CCDC39Q9UFE4 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC5.27□□□□□ -1.57
CCDC39Q9UFE4 AC008571.1-201ENST00000467232 300 ntBASIC5.27□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 98.6 ms