Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC3.18□□□□□ -1.9
VPS54Q9P1Q0 BEND7P1-201ENST00000422058 457 ntBASIC3.18□□□□□ -1.9
VPS54Q9P1Q0 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC3.18□□□□□ -1.9
VPS54Q9P1Q0 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC3.18□□□□□ -1.9
VPS54Q9P1Q0 USP9YP35-201ENST00000435696 412 ntBASIC3.18□□□□□ -1.9
VPS54Q9P1Q0 SDCBPP1-201ENST00000440192 890 ntBASIC3.18□□□□□ -1.9
VPS54Q9P1Q0 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC3.18□□□□□ -1.9
VPS54Q9P1Q0 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC3.18□□□□□ -1.9
VPS54Q9P1Q0 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.18□□□□□ -1.9
VPS54Q9P1Q0 RPS26P21-201ENST00000475397 348 ntBASIC3.18□□□□□ -1.9
VPS54Q9P1Q0 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC3.18□□□□□ -1.9
VPS54Q9P1Q0 RPL7P18-201ENST00000478965 734 ntBASIC3.18□□□□□ -1.9
VPS54Q9P1Q0 RPS3AP14-201ENST00000483907 780 ntBASIC3.18□□□□□ -1.9
VPS54Q9P1Q0 AC020699.1-201ENST00000505161 445 ntBASIC3.18□□□□□ -1.9
VPS54Q9P1Q0 AC104090.1-201ENST00000506341 1171 ntBASIC3.18□□□□□ -1.9
VPS54Q9P1Q0 MEPE-206ENST00000511670 550 ntTSL 4 BASIC3.18□□□□□ -1.9
VPS54Q9P1Q0 RN7SKP132-201ENST00000516001 208 ntBASIC3.18□□□□□ -1.9
VPS54Q9P1Q0 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
VPS54Q9P1Q0 AP001372.4-201ENST00000524889 472 ntBASIC3.18□□□□□ -1.9
VPS54Q9P1Q0 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
VPS54Q9P1Q0 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC3.18□□□□□ -1.9
VPS54Q9P1Q0 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC3.18□□□□□ -1.9
VPS54Q9P1Q0 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC3.18□□□□□ -1.9
VPS54Q9P1Q0 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC3.18□□□□□ -1.9
VPS54Q9P1Q0 DUXAP11-201ENST00000603858 526 ntBASIC3.18□□□□□ -1.9
VPS54Q9P1Q0 AC007349.4-201ENST00000608114 532 ntBASIC3.18□□□□□ -1.9
VPS54Q9P1Q0 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC3.18□□□□□ -1.9
VPS54Q9P1Q0 AC097478.2-201ENST00000610572 514 ntBASIC3.18□□□□□ -1.9
VPS54Q9P1Q0 FAM35CP-201ENST00000554755 2470 ntBASIC3.18□□□□□ -1.9
VPS54Q9P1Q0 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
VPS54Q9P1Q0 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.17□□□□□ -1.9
VPS54Q9P1Q0 ZNF876P-202ENST00000398732 1485 ntBASIC3.17□□□□□ -1.9
VPS54Q9P1Q0 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
VPS54Q9P1Q0 RNU6-882P-201ENST00000391025 103 ntBASIC3.17□□□□□ -1.9
VPS54Q9P1Q0 AL138827.1-201ENST00000402666 306 ntBASIC3.17□□□□□ -1.9
VPS54Q9P1Q0 AL590004.2-201ENST00000404787 371 ntBASIC3.17□□□□□ -1.9
VPS54Q9P1Q0 RNU6-757P-201ENST00000410334 100 ntBASIC3.17□□□□□ -1.9
VPS54Q9P1Q0 MRPL50P2-201ENST00000416821 482 ntBASIC3.17□□□□□ -1.9
VPS54Q9P1Q0 B3GALNT1P1-201ENST00000420569 975 ntBASIC3.17□□□□□ -1.9
VPS54Q9P1Q0 AL953862.1-201ENST00000423016 168 ntBASIC3.17□□□□□ -1.9
VPS54Q9P1Q0 AL390023.1-201ENST00000428836 262 ntBASIC3.17□□□□□ -1.9
VPS54Q9P1Q0 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC3.17□□□□□ -1.9
VPS54Q9P1Q0 OR2B8P-201ENST00000432841 938 ntBASIC3.17□□□□□ -1.9
VPS54Q9P1Q0 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
VPS54Q9P1Q0 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC3.17□□□□□ -1.9
VPS54Q9P1Q0 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC3.17□□□□□ -1.9
VPS54Q9P1Q0 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC3.17□□□□□ -1.9
VPS54Q9P1Q0 FAM172BP-201ENST00000487497 1089 ntBASIC3.17□□□□□ -1.9
VPS54Q9P1Q0 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
VPS54Q9P1Q0 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC3.17□□□□□ -1.9
VPS54Q9P1Q0 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC3.17□□□□□ -1.9
VPS54Q9P1Q0 RN7SKP282-201ENST00000516824 299 ntBASIC3.17□□□□□ -1.9
VPS54Q9P1Q0 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC3.17□□□□□ -1.9
VPS54Q9P1Q0 MTCO2P15-201ENST00000532655 656 ntBASIC3.17□□□□□ -1.9
VPS54Q9P1Q0 AL133271.1-201ENST00000538229 291 ntBASIC3.17□□□□□ -1.9
VPS54Q9P1Q0 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC3.17□□□□□ -1.9
VPS54Q9P1Q0 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.17□□□□□ -1.9
VPS54Q9P1Q0 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.17□□□□□ -1.9
VPS54Q9P1Q0 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC3.17□□□□□ -1.9
VPS54Q9P1Q0 AC004987.4-201ENST00000603383 338 ntBASIC3.17□□□□□ -1.9
VPS54Q9P1Q0 AC012443.1-201ENST00000605605 231 ntBASIC3.17□□□□□ -1.9
VPS54Q9P1Q0 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC3.17□□□□□ -1.9
VPS54Q9P1Q0 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC3.17□□□□□ -1.9
VPS54Q9P1Q0 AL596245.1-201ENST00000618994 362 ntBASIC3.17□□□□□ -1.9
VPS54Q9P1Q0 AC084035.1-201ENST00000634543 607 ntBASIC3.17□□□□□ -1.9
VPS54Q9P1Q0 CRYM-AS1-204ENST00000637983 556 ntBASIC3.17□□□□□ -1.9
VPS54Q9P1Q0 ANKRD62P1-201ENST00000434304 1623 ntBASIC3.17□□□□□ -1.9
VPS54Q9P1Q0 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
VPS54Q9P1Q0 AC009487.2-201ENST00000420969 6821 ntBASIC3.17□□□□□ -1.9
VPS54Q9P1Q0 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
VPS54Q9P1Q0 AC005539.1-201ENST00000443768 1479 ntBASIC3.16□□□□□ -1.9
VPS54Q9P1Q0 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.16□□□□□ -1.9
VPS54Q9P1Q0 MIR26A1-201ENST00000362205 77 ntBASIC3.16□□□□□ -1.9
VPS54Q9P1Q0 RNU6-83P-201ENST00000384568 112 ntBASIC3.16□□□□□ -1.9
VPS54Q9P1Q0 MTCYBP38-201ENST00000417160 1123 ntBASIC3.16□□□□□ -1.9
VPS54Q9P1Q0 RPL21P32-201ENST00000419877 477 ntBASIC3.16□□□□□ -1.9
VPS54Q9P1Q0 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC3.16□□□□□ -1.9
VPS54Q9P1Q0 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC3.16□□□□□ -1.9
VPS54Q9P1Q0 ZYG11AP1-201ENST00000430329 837 ntBASIC3.16□□□□□ -1.9
VPS54Q9P1Q0 AC112220.1-201ENST00000434628 355 ntBASIC3.16□□□□□ -1.9
VPS54Q9P1Q0 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC3.16□□□□□ -1.9
VPS54Q9P1Q0 MTND5P14-201ENST00000441481 1267 ntBASIC3.16□□□□□ -1.9
VPS54Q9P1Q0 RPS24P13-201ENST00000442520 397 ntBASIC3.16□□□□□ -1.9
VPS54Q9P1Q0 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.16□□□□□ -1.9
VPS54Q9P1Q0 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC3.16□□□□□ -1.9
VPS54Q9P1Q0 EEF1E1P1-201ENST00000446998 430 ntBASIC3.16□□□□□ -1.9
VPS54Q9P1Q0 AC002381.1-201ENST00000447049 280 ntBASIC3.16□□□□□ -1.9
VPS54Q9P1Q0 OR6K5P-201ENST00000447050 945 ntBASIC3.16□□□□□ -1.9
VPS54Q9P1Q0 ARPC3P5-201ENST00000448802 534 ntBASIC3.16□□□□□ -1.9
VPS54Q9P1Q0 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC3.16□□□□□ -1.9
VPS54Q9P1Q0 AC017037.2-201ENST00000513850 890 ntBASIC3.16□□□□□ -1.9
VPS54Q9P1Q0 RNA5SP367-201ENST00000516557 118 ntBASIC3.16□□□□□ -1.9
VPS54Q9P1Q0 AC022690.1-201ENST00000526681 550 ntBASIC3.16□□□□□ -1.9
VPS54Q9P1Q0 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
VPS54Q9P1Q0 AP000857.1-201ENST00000532151 543 ntBASIC3.16□□□□□ -1.9
VPS54Q9P1Q0 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
VPS54Q9P1Q0 AC007954.1-201ENST00000554198 494 ntBASIC3.16□□□□□ -1.9
VPS54Q9P1Q0 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC3.16□□□□□ -1.9
VPS54Q9P1Q0 AC090615.1-201ENST00000577519 154 ntBASIC3.16□□□□□ -1.9
VPS54Q9P1Q0 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 140.8 ms