Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 SNORD56.5-201ENST00000364281 72 ntBASIC1.28□□□□□ -2.2
CSPG4Q6UVK1 SNORA67.6-201ENST00000391093 99 ntBASIC1.28□□□□□ -2.2
CSPG4Q6UVK1 AC073264.1-201ENST00000411508 416 ntBASIC1.28□□□□□ -2.2
CSPG4Q6UVK1 SRIP3-201ENST00000413200 219 ntBASIC1.28□□□□□ -2.2
CSPG4Q6UVK1 WARS2P1-201ENST00000429678 537 ntBASIC1.28□□□□□ -2.2
CSPG4Q6UVK1 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC1.28□□□□□ -2.2
CSPG4Q6UVK1 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
CSPG4Q6UVK1 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.28□□□□□ -2.2
CSPG4Q6UVK1 AL592494.3-201ENST00000609485 464 ntBASIC1.28□□□□□ -2.2
CSPG4Q6UVK1 AC011890.2-201ENST00000613393 294 ntBASIC1.28□□□□□ -2.2
CSPG4Q6UVK1 AC008121.3-201ENST00000618726 433 ntBASIC1.28□□□□□ -2.2
CSPG4Q6UVK1 AK6-205ENST00000618980 483 ntTSL 2 BASIC1.28□□□□□ -2.2
CSPG4Q6UVK1 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC1.28□□□□□ -2.2
CSPG4Q6UVK1 AL121594.5-201ENST00000631724 573 ntBASIC1.28□□□□□ -2.2
CSPG4Q6UVK1 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC1.28□□□□□ -2.2
CSPG4Q6UVK1 BX510359.4-201ENST00000423750 193 ntBASIC1.28□□□□□ -2.2
CSPG4Q6UVK1 AL354695.1-201ENST00000427935 228 ntBASIC1.28□□□□□ -2.2
CSPG4Q6UVK1 DPPA2P1-201ENST00000428060 556 ntBASIC1.28□□□□□ -2.2
CSPG4Q6UVK1 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC1.28□□□□□ -2.2
CSPG4Q6UVK1 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC1.28□□□□□ -2.2
CSPG4Q6UVK1 RFC5P1-201ENST00000454419 874 ntBASIC1.28□□□□□ -2.2
CSPG4Q6UVK1 AC090515.1-201ENST00000465295 476 ntBASIC1.28□□□□□ -2.2
CSPG4Q6UVK1 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.28□□□□□ -2.2
CSPG4Q6UVK1 IGHVIII-38-1-201ENST00000521454 282 ntBASIC1.28□□□□□ -2.2
CSPG4Q6UVK1 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC1.28□□□□□ -2.2
CSPG4Q6UVK1 CYP3A137P-201ENST00000562436 69 ntBASIC1.28□□□□□ -2.2
CSPG4Q6UVK1 MTCO3P24-201ENST00000572729 782 ntBASIC1.28□□□□□ -2.2
CSPG4Q6UVK1 MTATP6P3-201ENST00000581686 676 ntBASIC1.28□□□□□ -2.2
CSPG4Q6UVK1 AC245036.5-201ENST00000596330 847 ntBASIC1.28□□□□□ -2.2
CSPG4Q6UVK1 AL133393.1-201ENST00000603277 287 ntBASIC1.28□□□□□ -2.2
CSPG4Q6UVK1 MIR98-201ENST00000606724 119 ntBASIC1.28□□□□□ -2.2
CSPG4Q6UVK1 AC097468.3-201ENST00000607956 456 ntBASIC1.28□□□□□ -2.2
CSPG4Q6UVK1 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
CSPG4Q6UVK1 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC1.28□□□□□ -2.2
CSPG4Q6UVK1 AC009487.4-201ENST00000624969 3585 ntBASIC1.28□□□□□ -2.2
CSPG4Q6UVK1 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.27□□□□□ -2.21
CSPG4Q6UVK1 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.27□□□□□ -2.21
CSPG4Q6UVK1 AC012321.1-201ENST00000561622 1588 ntBASIC1.27□□□□□ -2.21
CSPG4Q6UVK1 SNORA70.7-201ENST00000384159 133 ntBASIC1.27□□□□□ -2.21
CSPG4Q6UVK1 MCTS2P-201ENST00000394552 546 ntBASIC1.27□□□□□ -2.21
CSPG4Q6UVK1 RSL24D1P2-201ENST00000445584 366 ntBASIC1.27□□□□□ -2.21
CSPG4Q6UVK1 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
CSPG4Q6UVK1 OR7L1P-201ENST00000456181 380 ntBASIC1.27□□□□□ -2.21
CSPG4Q6UVK1 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC1.27□□□□□ -2.21
CSPG4Q6UVK1 RPPH1-2P-201ENST00000516688 293 ntBASIC1.27□□□□□ -2.21
CSPG4Q6UVK1 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC1.27□□□□□ -2.21
CSPG4Q6UVK1 AC007375.1-201ENST00000554513 578 ntBASIC1.27□□□□□ -2.21
CSPG4Q6UVK1 AC123786.2-201ENST00000603459 275 ntBASIC1.27□□□□□ -2.21
CSPG4Q6UVK1 AC091895.1-201ENST00000624494 256 ntBASIC1.27□□□□□ -2.21
CSPG4Q6UVK1 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
CSPG4Q6UVK1 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC1.27□□□□□ -2.21
CSPG4Q6UVK1 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC1.27□□□□□ -2.21
CSPG4Q6UVK1 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
CSPG4Q6UVK1 RNA5SP489-201ENST00000410986 109 ntBASIC1.27□□□□□ -2.21
CSPG4Q6UVK1 HMGN2P35-201ENST00000412164 270 ntBASIC1.27□□□□□ -2.21
CSPG4Q6UVK1 AL513185.2-201ENST00000425543 193 ntBASIC1.27□□□□□ -2.21
CSPG4Q6UVK1 ARL5AP3-201ENST00000439327 386 ntBASIC1.27□□□□□ -2.21
CSPG4Q6UVK1 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC1.27□□□□□ -2.21
CSPG4Q6UVK1 HESX1-202ENST00000473921 757 ntTSL 5 BASIC1.27□□□□□ -2.21
CSPG4Q6UVK1 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC1.27□□□□□ -2.21
CSPG4Q6UVK1 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC1.27□□□□□ -2.21
CSPG4Q6UVK1 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC1.27□□□□□ -2.21
CSPG4Q6UVK1 MIR5000-201ENST00000577717 103 ntBASIC1.27□□□□□ -2.21
CSPG4Q6UVK1 MIR4458-201ENST00000578872 75 ntBASIC1.27□□□□□ -2.21
CSPG4Q6UVK1 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC1.27□□□□□ -2.21
CSPG4Q6UVK1 SLC10A5P1-201ENST00000379063 1306 ntBASIC1.27□□□□□ -2.21
CSPG4Q6UVK1 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC1.27□□□□□ -2.21
CSPG4Q6UVK1 PABPC1P9-201ENST00000426076 1612 ntBASIC1.27□□□□□ -2.21
CSPG4Q6UVK1 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
CSPG4Q6UVK1 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC1.26□□□□□ -2.21
CSPG4Q6UVK1 VTRNA1-1-201ENST00000363120 99 ntBASIC1.26□□□□□ -2.21
CSPG4Q6UVK1 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC1.26□□□□□ -2.21
CSPG4Q6UVK1 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.26□□□□□ -2.21
CSPG4Q6UVK1 BLOC1S2P1-201ENST00000428431 301 ntBASIC1.26□□□□□ -2.21
CSPG4Q6UVK1 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC1.26□□□□□ -2.21
CSPG4Q6UVK1 SNRPFP2-201ENST00000440710 251 ntBASIC1.26□□□□□ -2.21
CSPG4Q6UVK1 USP9YP10-201ENST00000454868 628 ntBASIC1.26□□□□□ -2.21
CSPG4Q6UVK1 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC1.26□□□□□ -2.21
CSPG4Q6UVK1 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC1.26□□□□□ -2.21
CSPG4Q6UVK1 AC084851.1-201ENST00000529105 249 ntBASIC1.26□□□□□ -2.21
CSPG4Q6UVK1 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.26□□□□□ -2.21
CSPG4Q6UVK1 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC1.26□□□□□ -2.21
CSPG4Q6UVK1 AC024614.2-201ENST00000577584 372 ntBASIC1.26□□□□□ -2.21
CSPG4Q6UVK1 AC006329.2-201ENST00000611491 394 ntBASIC1.26□□□□□ -2.21
CSPG4Q6UVK1 AC009318.3-201ENST00000616916 503 ntBASIC1.26□□□□□ -2.21
CSPG4Q6UVK1 AC090617.7-201ENST00000623952 126 ntBASIC1.26□□□□□ -2.21
CSPG4Q6UVK1 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.26□□□□□ -2.21
CSPG4Q6UVK1 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC1.26□□□□□ -2.21
CSPG4Q6UVK1 RLIMP2-201ENST00000427891 1563 ntBASIC1.26□□□□□ -2.21
CSPG4Q6UVK1 AC114546.3-201ENST00000623582 1734 ntBASIC1.26□□□□□ -2.21
CSPG4Q6UVK1 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.26□□□□□ -2.21
CSPG4Q6UVK1 MTND4LP13-201ENST00000425022 298 ntBASIC1.26□□□□□ -2.21
CSPG4Q6UVK1 AC005297.2-201ENST00000450430 606 ntBASIC1.26□□□□□ -2.21
CSPG4Q6UVK1 AC023424.2-201ENST00000493479 777 ntBASIC1.26□□□□□ -2.21
CSPG4Q6UVK1 AC006390.1-201ENST00000508068 283 ntBASIC1.26□□□□□ -2.21
CSPG4Q6UVK1 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC1.26□□□□□ -2.21
CSPG4Q6UVK1 AC022790.1-201ENST00000522872 204 ntBASIC1.26□□□□□ -2.21
CSPG4Q6UVK1 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC1.26□□□□□ -2.21
CSPG4Q6UVK1 HSPE1P14-201ENST00000605812 302 ntBASIC1.26□□□□□ -2.21
CSPG4Q6UVK1 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC1.26□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 98.2 ms