Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
COL7A1Q02388 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
COL7A1Q02388 VTRNA1-3-201ENST00000365645 89 ntBASIC1.06□□□□□ -2.24
COL7A1Q02388 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC1.06□□□□□ -2.24
COL7A1Q02388 AL513185.2-201ENST00000425543 193 ntBASIC1.06□□□□□ -2.24
COL7A1Q02388 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC1.06□□□□□ -2.24
COL7A1Q02388 IFNWP4-201ENST00000453148 294 ntBASIC1.06□□□□□ -2.24
COL7A1Q02388 PTGES3P5-201ENST00000455109 434 ntBASIC1.06□□□□□ -2.24
COL7A1Q02388 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
COL7A1Q02388 AL359273.1-201ENST00000510918 627 ntBASIC1.06□□□□□ -2.24
COL7A1Q02388 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC1.06□□□□□ -2.24
COL7A1Q02388 MIR6788-201ENST00000618842 66 ntBASIC1.06□□□□□ -2.24
COL7A1Q02388 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
COL7A1Q02388 U8.1-201ENST00000362843 134 ntBASIC1.06□□□□□ -2.24
COL7A1Q02388 SNORD48-201ENST00000364953 64 ntBASIC1.06□□□□□ -2.24
COL7A1Q02388 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC1.06□□□□□ -2.24
COL7A1Q02388 OFD1P12Y-201ENST00000427963 1207 ntBASIC1.06□□□□□ -2.24
COL7A1Q02388 VN1R108P-201ENST00000431580 830 ntBASIC1.06□□□□□ -2.24
COL7A1Q02388 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC1.06□□□□□ -2.24
COL7A1Q02388 AC011124.1-204ENST00000522265 562 ntTSL 4 BASIC1.06□□□□□ -2.24
COL7A1Q02388 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.06□□□□□ -2.24
COL7A1Q02388 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC1.06□□□□□ -2.24
COL7A1Q02388 MIR373-201ENST00000362273 69 ntBASIC1.05□□□□□ -2.24
COL7A1Q02388 RNA5SP27-201ENST00000363839 119 ntBASIC1.05□□□□□ -2.24
COL7A1Q02388 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC1.05□□□□□ -2.24
COL7A1Q02388 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.05□□□□□ -2.24
COL7A1Q02388 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC1.05□□□□□ -2.24
COL7A1Q02388 RPS6P15-201ENST00000431996 751 ntBASIC1.05□□□□□ -2.24
COL7A1Q02388 RPS29P20-201ENST00000489592 171 ntBASIC1.05□□□□□ -2.24
COL7A1Q02388 MTCYBP18-201ENST00000501056 747 ntBASIC1.05□□□□□ -2.24
COL7A1Q02388 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC1.05□□□□□ -2.24
COL7A1Q02388 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC1.05□□□□□ -2.24
COL7A1Q02388 SNORA31.11-201ENST00000516528 139 ntBASIC1.05□□□□□ -2.24
COL7A1Q02388 AC023825.1-201ENST00000566704 1030 ntBASIC1.05□□□□□ -2.24
COL7A1Q02388 MIR5000-201ENST00000577717 103 ntBASIC1.05□□□□□ -2.24
COL7A1Q02388 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC1.05□□□□□ -2.24
COL7A1Q02388 SLC10A5P1-201ENST00000379063 1306 ntBASIC1.05□□□□□ -2.24
COL7A1Q02388 CNOT6LP1-201ENST00000559681 1462 ntBASIC1.05□□□□□ -2.24
COL7A1Q02388 RNU6-461P-201ENST00000364195 107 ntBASIC1.05□□□□□ -2.24
COL7A1Q02388 AC009965.2-201ENST00000425328 970 ntBASIC1.05□□□□□ -2.24
COL7A1Q02388 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC1.05□□□□□ -2.24
COL7A1Q02388 SNRPGP3-201ENST00000469405 227 ntBASIC1.05□□□□□ -2.24
COL7A1Q02388 AC090453.1-201ENST00000495560 436 ntBASIC1.05□□□□□ -2.24
COL7A1Q02388 AKIRIN1P1-201ENST00000547384 544 ntBASIC1.05□□□□□ -2.24
COL7A1Q02388 SETP7-201ENST00000552169 453 ntBASIC1.05□□□□□ -2.24
COL7A1Q02388 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC1.05□□□□□ -2.24
COL7A1Q02388 MIR6086-201ENST00000638065 55 ntBASIC1.05□□□□□ -2.24
COL7A1Q02388 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.05□□□□□ -2.24
COL7A1Q02388 AC007256.1-201ENST00000392253 2765 ntBASIC1.05□□□□□ -2.24
COL7A1Q02388 SNORD114-27-201ENST00000363766 70 ntBASIC1.05□□□□□ -2.24
COL7A1Q02388 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC1.05□□□□□ -2.24
COL7A1Q02388 HMGN2P38-201ENST00000423806 265 ntBASIC1.05□□□□□ -2.24
COL7A1Q02388 GTF2IP7-202ENST00000436677 309 ntBASIC1.05□□□□□ -2.24
COL7A1Q02388 AC073901.1-201ENST00000462471 408 ntBASIC1.05□□□□□ -2.24
COL7A1Q02388 FABP5P6-201ENST00000510588 409 ntBASIC1.05□□□□□ -2.24
COL7A1Q02388 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC1.05□□□□□ -2.24
COL7A1Q02388 AC084851.1-201ENST00000529105 249 ntBASIC1.05□□□□□ -2.24
COL7A1Q02388 PRELID2P1-201ENST00000552837 301 ntBASIC1.05□□□□□ -2.24
COL7A1Q02388 AC011890.2-201ENST00000613393 294 ntBASIC1.05□□□□□ -2.24
COL7A1Q02388 AL158801.5-201ENST00000623123 465 ntBASIC1.05□□□□□ -2.24
COL7A1Q02388 RNU6-115P-201ENST00000364310 107 ntBASIC1.04□□□□□ -2.24
COL7A1Q02388 MIR193B-201ENST00000384907 83 ntBASIC1.04□□□□□ -2.24
COL7A1Q02388 RNU1-139P-201ENST00000391307 165 ntBASIC1.04□□□□□ -2.24
COL7A1Q02388 RPL19P1-201ENST00000411635 428 ntBASIC1.04□□□□□ -2.24
COL7A1Q02388 AC109583.1-201ENST00000432156 268 ntBASIC1.04□□□□□ -2.24
COL7A1Q02388 RPL34P26-201ENST00000445636 354 ntBASIC1.04□□□□□ -2.24
COL7A1Q02388 AC005297.2-201ENST00000450430 606 ntBASIC1.04□□□□□ -2.24
COL7A1Q02388 AL021397.1-201ENST00000451806 248 ntBASIC1.04□□□□□ -2.24
COL7A1Q02388 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC1.04□□□□□ -2.24
COL7A1Q02388 DUXAP8-207ENST00000456786 622 ntBASIC1.04□□□□□ -2.24
COL7A1Q02388 ARL2BPP4-201ENST00000506854 471 ntBASIC1.04□□□□□ -2.24
COL7A1Q02388 MTCO3P44-201ENST00000510977 541 ntBASIC1.04□□□□□ -2.24
COL7A1Q02388 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC1.04□□□□□ -2.24
COL7A1Q02388 CR383656.8-201ENST00000549046 145 ntBASIC1.04□□□□□ -2.24
COL7A1Q02388 AC068135.2-201ENST00000569293 1028 ntBASIC1.04□□□□□ -2.24
COL7A1Q02388 AC103810.8-201ENST00000607347 118 ntBASIC1.04□□□□□ -2.24
COL7A1Q02388 XIST_intron.1-201ENST00000619444 68 ntBASIC1.04□□□□□ -2.24
COL7A1Q02388 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC1.04□□□□□ -2.24
COL7A1Q02388 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC1.04□□□□□ -2.24
COL7A1Q02388 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC1.04□□□□□ -2.24
COL7A1Q02388 MTCYBP45-201ENST00000435243 565 ntBASIC1.04□□□□□ -2.24
COL7A1Q02388 MTCYBP12-201ENST00000440559 1134 ntBASIC1.04□□□□□ -2.24
COL7A1Q02388 MTCO1P48-201ENST00000448024 1096 ntBASIC1.04□□□□□ -2.24
COL7A1Q02388 AC069528.1-202ENST00000482888 637 ntBASIC1.04□□□□□ -2.24
COL7A1Q02388 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC1.04□□□□□ -2.24
COL7A1Q02388 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC1.04□□□□□ -2.24
COL7A1Q02388 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC1.04□□□□□ -2.24
COL7A1Q02388 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC1.04□□□□□ -2.24
COL7A1Q02388 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC1.04□□□□□ -2.24
COL7A1Q02388 AC016877.3-201ENST00000606778 504 ntBASIC1.04□□□□□ -2.24
COL7A1Q02388 AC006026.1-201ENST00000444025 1803 ntBASIC1.04□□□□□ -2.24
COL7A1Q02388 SGO1P2-201ENST00000429458 1589 ntBASIC1.03□□□□□ -2.24
COL7A1Q02388 MIR216A-201ENST00000385063 110 ntBASIC1.03□□□□□ -2.24
COL7A1Q02388 RPL23AP29-201ENST00000397284 453 ntBASIC1.03□□□□□ -2.24
COL7A1Q02388 RPS12P24-201ENST00000412619 387 ntBASIC1.03□□□□□ -2.24
COL7A1Q02388 USP9YP27-201ENST00000418455 438 ntBASIC1.03□□□□□ -2.24
COL7A1Q02388 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC1.03□□□□□ -2.24
COL7A1Q02388 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC1.03□□□□□ -2.24
COL7A1Q02388 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC1.03□□□□□ -2.24
COL7A1Q02388 RPS23P4-201ENST00000487908 423 ntBASIC1.03□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 114.4 ms