Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 NDUFS5P6-201ENST00000529136 295 ntBASIC2.71□□□□□ -1.98
COL4A4P53420 AP002963.1-201ENST00000530590 184 ntBASIC2.71□□□□□ -1.98
COL4A4P53420 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC2.71□□□□□ -1.98
COL4A4P53420 AC087481.2-201ENST00000565492 330 ntBASIC2.71□□□□□ -1.98
COL4A4P53420 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC2.71□□□□□ -1.98
COL4A4P53420 AC074051.3-201ENST00000570238 358 ntBASIC2.71□□□□□ -1.98
COL4A4P53420 AC090616.2-202ENST00000584248 222 ntBASIC2.71□□□□□ -1.98
COL4A4P53420 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC2.71□□□□□ -1.98
COL4A4P53420 AC106791.2-201ENST00000604680 391 ntBASIC2.71□□□□□ -1.98
COL4A4P53420 TUSC7.1-201ENST00000610969 165 ntBASIC2.71□□□□□ -1.98
COL4A4P53420 PART1_2.1-201ENST00000612397 250 ntBASIC2.71□□□□□ -1.98
COL4A4P53420 AL158063.1-201ENST00000615349 536 ntBASIC2.71□□□□□ -1.98
COL4A4P53420 AL359314.1-201ENST00000616913 261 ntBASIC2.71□□□□□ -1.98
COL4A4P53420 VN1R7P-201ENST00000619242 903 ntBASIC2.71□□□□□ -1.98
COL4A4P53420 AC074140.1-201ENST00000621617 208 ntBASIC2.71□□□□□ -1.98
COL4A4P53420 AC024595.1-201ENST00000623088 387 ntBASIC2.71□□□□□ -1.98
COL4A4P53420 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.71□□□□□ -1.98
COL4A4P53420 AC110994.2-201ENST00000635481 492 ntBASIC2.71□□□□□ -1.98
COL4A4P53420 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC2.71□□□□□ -1.98
COL4A4P53420 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
COL4A4P53420 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC2.71□□□□□ -1.98
COL4A4P53420 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
COL4A4P53420 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
COL4A4P53420 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
COL4A4P53420 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC2.7□□□□□ -1.98
COL4A4P53420 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC2.7□□□□□ -1.98
COL4A4P53420 Y_RNA.3-201ENST00000362331 103 ntBASIC2.7□□□□□ -1.98
COL4A4P53420 Y_RNA.6-201ENST00000362350 114 ntBASIC2.7□□□□□ -1.98
COL4A4P53420 Y_RNA.41-201ENST00000362646 102 ntBASIC2.7□□□□□ -1.98
COL4A4P53420 SNORD114-1-201ENST00000362705 72 ntBASIC2.7□□□□□ -1.98
COL4A4P53420 RNU6-252P-201ENST00000363232 107 ntBASIC2.7□□□□□ -1.98
COL4A4P53420 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC2.7□□□□□ -1.98
COL4A4P53420 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC2.7□□□□□ -1.98
COL4A4P53420 MOB4-205ENST00000409916 829 ntTSL 3 BASIC2.7□□□□□ -1.98
COL4A4P53420 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC2.7□□□□□ -1.98
COL4A4P53420 AC080125.1-201ENST00000414888 684 ntBASIC2.7□□□□□ -1.98
COL4A4P53420 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.7□□□□□ -1.98
COL4A4P53420 AC129850.1-201ENST00000436203 508 ntBASIC2.7□□□□□ -1.98
COL4A4P53420 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC2.7□□□□□ -1.98
COL4A4P53420 AL357520.1-201ENST00000441557 453 ntBASIC2.7□□□□□ -1.98
COL4A4P53420 AC027673.1-201ENST00000456245 405 ntBASIC2.7□□□□□ -1.98
COL4A4P53420 AC068305.1-201ENST00000497406 726 ntBASIC2.7□□□□□ -1.98
COL4A4P53420 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC2.7□□□□□ -1.98
COL4A4P53420 AC067904.2-201ENST00000517322 1283 ntBASIC2.7□□□□□ -1.98
COL4A4P53420 NPM1P52-201ENST00000518264 846 ntBASIC2.7□□□□□ -1.98
COL4A4P53420 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC2.7□□□□□ -1.98
COL4A4P53420 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC2.7□□□□□ -1.98
COL4A4P53420 AC128657.1-201ENST00000549459 145 ntBASIC2.7□□□□□ -1.98
COL4A4P53420 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC2.7□□□□□ -1.98
COL4A4P53420 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC2.7□□□□□ -1.98
COL4A4P53420 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC2.7□□□□□ -1.98
COL4A4P53420 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC2.7□□□□□ -1.98
COL4A4P53420 MIR1273D-201ENST00000577266 86 ntBASIC2.7□□□□□ -1.98
COL4A4P53420 DUXAP11-201ENST00000603858 526 ntBASIC2.7□□□□□ -1.98
COL4A4P53420 AC021749.1-201ENST00000604322 607 ntBASIC2.7□□□□□ -1.98
COL4A4P53420 AC128687.1-201ENST00000605304 619 ntBASIC2.7□□□□□ -1.98
COL4A4P53420 AC007684.1-201ENST00000609671 477 ntBASIC2.7□□□□□ -1.98
COL4A4P53420 AL158163.2-201ENST00000619110 700 ntBASIC2.7□□□□□ -1.98
COL4A4P53420 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC2.7□□□□□ -1.98
COL4A4P53420 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
COL4A4P53420 AC004520.1-201ENST00000608362 1413 ntBASIC2.7□□□□□ -1.98
COL4A4P53420 BX005019.1-201ENST00000561881 1810 ntBASIC2.7□□□□□ -1.98
COL4A4P53420 MIR365B-201ENST00000362317 111 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 RNU5E-4P-201ENST00000364931 120 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 SNORD116.1-201ENST00000365628 92 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 AL359511.1-201ENST00000402970 211 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 AL590084.1-201ENST00000407885 387 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 SNORD88.1-201ENST00000408684 91 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC2.69□□□□□ -1.98
COL4A4P53420 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC2.69□□□□□ -1.98
COL4A4P53420 MTND5P2-201ENST00000442927 1142 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC2.69□□□□□ -1.98
COL4A4P53420 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC2.69□□□□□ -1.98
COL4A4P53420 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC2.69□□□□□ -1.98
COL4A4P53420 RPL31P20-201ENST00000449593 360 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC2.69□□□□□ -1.98
COL4A4P53420 CEACAMP4-201ENST00000457676 421 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 AC005410.1-202ENST00000460347 485 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 RPL30P9-201ENST00000465586 330 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 RPL21P99-201ENST00000480369 423 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 LINC00888-204ENST00000487386 421 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
COL4A4P53420 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC2.69□□□□□ -1.98
COL4A4P53420 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC2.69□□□□□ -1.98
COL4A4P53420 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC2.69□□□□□ -1.98
COL4A4P53420 EEF1B2P4-201ENST00000551398 348 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 AC023813.2-201ENST00000564321 469 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 MIR4999-201ENST00000585029 91 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 VN1R88P-201ENST00000596787 292 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC2.69□□□□□ -1.98
COL4A4P53420 AL136363.2-201ENST00000604173 851 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 AC011451.2-201ENST00000604303 598 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 AC009570.1-201ENST00000609599 745 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 AF246928.1-201ENST00000623768 87 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
COL4A4P53420 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC2.69□□□□□ -1.98
COL4A4P53420 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC2.69□□□□□ -1.98
COL4A4P53420 CDC27P2-201ENST00000425026 1922 ntBASIC2.69□□□□□ -1.98
COL4A4P53420 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC2.69□□□□□ -1.98
COL4A4P53420 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC2.69□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 95.8 ms