Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AC024589.1-201ENST00000512207 263 ntBASIC3.3□□□□□ -1.88
PCDHGA1Q9Y5H4 AC017037.2-201ENST00000513850 890 ntBASIC3.3□□□□□ -1.88
PCDHGA1Q9Y5H4 SNORA3.4-201ENST00000515969 96 ntBASIC3.3□□□□□ -1.88
PCDHGA1Q9Y5H4 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC3.3□□□□□ -1.88
PCDHGA1Q9Y5H4 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
PCDHGA1Q9Y5H4 DUXAP6-201ENST00000553858 601 ntBASIC3.3□□□□□ -1.88
PCDHGA1Q9Y5H4 SETP2-201ENST00000553886 926 ntBASIC3.3□□□□□ -1.88
PCDHGA1Q9Y5H4 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC3.3□□□□□ -1.88
PCDHGA1Q9Y5H4 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC3.3□□□□□ -1.88
PCDHGA1Q9Y5H4 AL451007.1-201ENST00000595491 289 ntBASIC3.3□□□□□ -1.88
PCDHGA1Q9Y5H4 AP001429.1-201ENST00000602568 530 ntBASIC3.3□□□□□ -1.88
PCDHGA1Q9Y5H4 AC073657.2-201ENST00000605661 303 ntBASIC3.3□□□□□ -1.88
PCDHGA1Q9Y5H4 AP000254.1-201ENST00000609934 520 ntBASIC3.3□□□□□ -1.88
PCDHGA1Q9Y5H4 AC087683.2-201ENST00000611384 326 ntBASIC3.3□□□□□ -1.88
PCDHGA1Q9Y5H4 AC009159.2-201ENST00000617603 606 ntBASIC3.3□□□□□ -1.88
PCDHGA1Q9Y5H4 AP000770.2-201ENST00000623694 100 ntBASIC3.3□□□□□ -1.88
PCDHGA1Q9Y5H4 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
PCDHGA1Q9Y5H4 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
PCDHGA1Q9Y5H4 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
PCDHGA1Q9Y5H4 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.3□□□□□ -1.88
PCDHGA1Q9Y5H4 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
PCDHGA1Q9Y5H4 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
PCDHGA1Q9Y5H4 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.29□□□□□ -1.88
PCDHGA1Q9Y5H4 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC3.29□□□□□ -1.88
PCDHGA1Q9Y5H4 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
PCDHGA1Q9Y5H4 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
PCDHGA1Q9Y5H4 Y_RNA.234-201ENST00000364409 97 ntBASIC3.29□□□□□ -1.88
PCDHGA1Q9Y5H4 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
PCDHGA1Q9Y5H4 RNU6-76P-201ENST00000384060 104 ntBASIC3.29□□□□□ -1.88
PCDHGA1Q9Y5H4 RNU6-1197P-201ENST00000391183 107 ntBASIC3.29□□□□□ -1.88
PCDHGA1Q9Y5H4 MTND1P21-201ENST00000412991 285 ntBASIC3.29□□□□□ -1.88
PCDHGA1Q9Y5H4 AC083875.1-201ENST00000419509 405 ntBASIC3.29□□□□□ -1.88
PCDHGA1Q9Y5H4 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC3.29□□□□□ -1.88
PCDHGA1Q9Y5H4 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.29□□□□□ -1.88
PCDHGA1Q9Y5H4 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC3.29□□□□□ -1.88
PCDHGA1Q9Y5H4 RPL23AP35-201ENST00000451906 501 ntBASIC3.29□□□□□ -1.88
PCDHGA1Q9Y5H4 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC3.29□□□□□ -1.88
PCDHGA1Q9Y5H4 RPL7P5-201ENST00000471472 736 ntBASIC3.29□□□□□ -1.88
PCDHGA1Q9Y5H4 AC109925.1-201ENST00000478069 331 ntBASIC3.29□□□□□ -1.88
PCDHGA1Q9Y5H4 AC097462.2-201ENST00000504623 481 ntBASIC3.29□□□□□ -1.88
PCDHGA1Q9Y5H4 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
PCDHGA1Q9Y5H4 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC3.29□□□□□ -1.88
PCDHGA1Q9Y5H4 AC026801.2-201ENST00000515352 425 ntBASIC3.29□□□□□ -1.88
PCDHGA1Q9Y5H4 RNA5SP341-201ENST00000516261 117 ntBASIC3.29□□□□□ -1.88
PCDHGA1Q9Y5H4 RNU6-714P-201ENST00000516963 103 ntBASIC3.29□□□□□ -1.88
PCDHGA1Q9Y5H4 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC3.29□□□□□ -1.88
PCDHGA1Q9Y5H4 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC3.29□□□□□ -1.88
PCDHGA1Q9Y5H4 AC009094.1-201ENST00000564443 426 ntBASIC3.29□□□□□ -1.88
PCDHGA1Q9Y5H4 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC3.29□□□□□ -1.88
PCDHGA1Q9Y5H4 RPL23AP84-201ENST00000571193 464 ntBASIC3.29□□□□□ -1.88
PCDHGA1Q9Y5H4 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.29□□□□□ -1.88
PCDHGA1Q9Y5H4 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.29□□□□□ -1.88
PCDHGA1Q9Y5H4 AC024560.3-201ENST00000608482 349 ntBASIC3.29□□□□□ -1.88
PCDHGA1Q9Y5H4 AL592295.2-201ENST00000612578 206 ntBASIC3.29□□□□□ -1.88
PCDHGA1Q9Y5H4 AL355493.4-201ENST00000618530 292 ntBASIC3.29□□□□□ -1.88
PCDHGA1Q9Y5H4 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
PCDHGA1Q9Y5H4 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC3.29□□□□□ -1.88
PCDHGA1Q9Y5H4 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
PCDHGA1Q9Y5H4 AC103706.2-201ENST00000638080 240 ntBASIC3.29□□□□□ -1.88
PCDHGA1Q9Y5H4 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.29□□□□□ -1.88
PCDHGA1Q9Y5H4 AC104454.1-201ENST00000421341 1401 ntBASIC3.28□□□□□ -1.88
PCDHGA1Q9Y5H4 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
PCDHGA1Q9Y5H4 AP000526.1-201ENST00000603308 1388 ntBASIC3.28□□□□□ -1.88
PCDHGA1Q9Y5H4 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.28□□□□□ -1.88
PCDHGA1Q9Y5H4 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.28□□□□□ -1.88
PCDHGA1Q9Y5H4 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.28□□□□□ -1.88
PCDHGA1Q9Y5H4 AL391994.1-201ENST00000254724 282 ntBASIC3.28□□□□□ -1.88
PCDHGA1Q9Y5H4 RNU5A-1-201ENST00000362698 116 ntBASIC3.28□□□□□ -1.88
PCDHGA1Q9Y5H4 RNU6-289P-201ENST00000364093 107 ntBASIC3.28□□□□□ -1.88
PCDHGA1Q9Y5H4 SNORA14A-201ENST00000364773 135 ntBASIC3.28□□□□□ -1.88
PCDHGA1Q9Y5H4 RNU6-1200P-201ENST00000384162 107 ntBASIC3.28□□□□□ -1.88
PCDHGA1Q9Y5H4 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
PCDHGA1Q9Y5H4 AL357075.1-201ENST00000404107 726 ntBASIC3.28□□□□□ -1.88
PCDHGA1Q9Y5H4 RNA5SP38-201ENST00000410750 119 ntBASIC3.28□□□□□ -1.88
PCDHGA1Q9Y5H4 HMGN1P24-201ENST00000412282 298 ntBASIC3.28□□□□□ -1.88
PCDHGA1Q9Y5H4 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.28□□□□□ -1.88
PCDHGA1Q9Y5H4 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC3.28□□□□□ -1.88
PCDHGA1Q9Y5H4 AL022400.1-201ENST00000423946 935 ntBASIC3.28□□□□□ -1.88
PCDHGA1Q9Y5H4 AC002075.2-201ENST00000425207 252 ntBASIC3.28□□□□□ -1.88
PCDHGA1Q9Y5H4 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC3.28□□□□□ -1.88
PCDHGA1Q9Y5H4 NDUFB4P6-201ENST00000436819 366 ntBASIC3.28□□□□□ -1.88
PCDHGA1Q9Y5H4 SKP1P1-201ENST00000438081 489 ntBASIC3.28□□□□□ -1.88
PCDHGA1Q9Y5H4 AL354941.1-201ENST00000438600 464 ntBASIC3.28□□□□□ -1.88
PCDHGA1Q9Y5H4 AL008629.1-201ENST00000438615 184 ntBASIC3.28□□□□□ -1.88
PCDHGA1Q9Y5H4 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC3.28□□□□□ -1.88
PCDHGA1Q9Y5H4 MTCO1P27-201ENST00000448269 226 ntBASIC3.28□□□□□ -1.88
PCDHGA1Q9Y5H4 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC3.28□□□□□ -1.88
PCDHGA1Q9Y5H4 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC3.28□□□□□ -1.88
PCDHGA1Q9Y5H4 RPL30P5-201ENST00000494923 336 ntBASIC3.28□□□□□ -1.88
PCDHGA1Q9Y5H4 AC104685.1-201ENST00000502445 371 ntBASIC3.28□□□□□ -1.88
PCDHGA1Q9Y5H4 MTCYBP35-201ENST00000503630 1137 ntBASIC3.28□□□□□ -1.88
PCDHGA1Q9Y5H4 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC3.28□□□□□ -1.88
PCDHGA1Q9Y5H4 APOOP4-201ENST00000513530 597 ntBASIC3.28□□□□□ -1.88
PCDHGA1Q9Y5H4 MTCYBP43-201ENST00000513621 740 ntBASIC3.28□□□□□ -1.88
PCDHGA1Q9Y5H4 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.28□□□□□ -1.88
PCDHGA1Q9Y5H4 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC3.28□□□□□ -1.88
PCDHGA1Q9Y5H4 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC3.28□□□□□ -1.88
PCDHGA1Q9Y5H4 LRRC34P1-201ENST00000542742 915 ntBASIC3.28□□□□□ -1.88
PCDHGA1Q9Y5H4 HMGB1P14-201ENST00000557424 591 ntBASIC3.28□□□□□ -1.88
PCDHGA1Q9Y5H4 AL158211.1-201ENST00000566763 763 ntBASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms