Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC2.52□□□□□ -2.01
CCDC88BA6NC98 AC073464.3-201ENST00000422564 712 ntBASIC2.52□□□□□ -2.01
CCDC88BA6NC98 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC2.52□□□□□ -2.01
CCDC88BA6NC98 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC2.52□□□□□ -2.01
CCDC88BA6NC98 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC2.52□□□□□ -2.01
CCDC88BA6NC98 RNA5SP480-201ENST00000516840 109 ntBASIC2.52□□□□□ -2.01
CCDC88BA6NC98 APOOP1-201ENST00000604695 592 ntBASIC2.52□□□□□ -2.01
CCDC88BA6NC98 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
CCDC88BA6NC98 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC2.52□□□□□ -2.01
CCDC88BA6NC98 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
CCDC88BA6NC98 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC2.51□□□□□ -2.01
CCDC88BA6NC98 C1GALT1P2-201ENST00000510813 1104 ntBASIC2.51□□□□□ -2.01
CCDC88BA6NC98 RNU1-92P-201ENST00000517017 135 ntBASIC2.51□□□□□ -2.01
CCDC88BA6NC98 AC139103.1-201ENST00000534696 1030 ntBASIC2.51□□□□□ -2.01
CCDC88BA6NC98 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC2.51□□□□□ -2.01
CCDC88BA6NC98 SNORA4-201ENST00000584302 138 ntBASIC2.51□□□□□ -2.01
CCDC88BA6NC98 AL110115.1-201ENST00000614396 364 ntBASIC2.51□□□□□ -2.01
CCDC88BA6NC98 U73479.1-201ENST00000618062 168 ntBASIC2.51□□□□□ -2.01
CCDC88BA6NC98 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.5□□□□□ -2.01
CCDC88BA6NC98 MIR144-201ENST00000384886 86 ntBASIC2.5□□□□□ -2.01
CCDC88BA6NC98 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC2.5□□□□□ -2.01
CCDC88BA6NC98 RPL23AP47-201ENST00000408017 460 ntBASIC2.5□□□□□ -2.01
CCDC88BA6NC98 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC2.5□□□□□ -2.01
CCDC88BA6NC98 AL357078.2-201ENST00000416486 427 ntBASIC2.5□□□□□ -2.01
CCDC88BA6NC98 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC2.5□□□□□ -2.01
CCDC88BA6NC98 MTND2P2-201ENST00000434633 945 ntBASIC2.5□□□□□ -2.01
CCDC88BA6NC98 AC234775.3-201ENST00000564612 656 ntBASIC2.5□□□□□ -2.01
CCDC88BA6NC98 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC2.5□□□□□ -2.01
CCDC88BA6NC98 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC2.5□□□□□ -2.01
CCDC88BA6NC98 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
CCDC88BA6NC98 RNU6-1027P-201ENST00000383998 107 ntBASIC2.49□□□□□ -2.01
CCDC88BA6NC98 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC2.49□□□□□ -2.01
CCDC88BA6NC98 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC2.49□□□□□ -2.01
CCDC88BA6NC98 HMGN2P38-201ENST00000423806 265 ntBASIC2.49□□□□□ -2.01
CCDC88BA6NC98 AC009965.2-201ENST00000425328 970 ntBASIC2.49□□□□□ -2.01
CCDC88BA6NC98 AC004223.1-201ENST00000479840 271 ntBASIC2.49□□□□□ -2.01
CCDC88BA6NC98 AC090096.1-201ENST00000489168 390 ntBASIC2.49□□□□□ -2.01
CCDC88BA6NC98 AC121758.2-201ENST00000553271 193 ntBASIC2.49□□□□□ -2.01
CCDC88BA6NC98 U8.1-201ENST00000362843 134 ntBASIC2.48□□□□□ -2.01
CCDC88BA6NC98 Y_RNA.191-201ENST00000363972 113 ntBASIC2.48□□□□□ -2.01
CCDC88BA6NC98 Z85995.1-201ENST00000415547 335 ntBASIC2.48□□□□□ -2.01
CCDC88BA6NC98 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC2.48□□□□□ -2.01
CCDC88BA6NC98 HMGN1P7-201ENST00000491722 313 ntBASIC2.48□□□□□ -2.01
CCDC88BA6NC98 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC2.48□□□□□ -2.01
CCDC88BA6NC98 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC2.48□□□□□ -2.01
CCDC88BA6NC98 uc_338.20-201ENST00000621563 178 ntBASIC2.48□□□□□ -2.01
CCDC88BA6NC98 AC090740.1-201ENST00000623193 2262 ntBASIC2.48□□□□□ -2.01
CCDC88BA6NC98 NUP58P1-201ENST00000502546 1738 ntBASIC2.48□□□□□ -2.01
CCDC88BA6NC98 RNA5SP393-201ENST00000363423 117 ntBASIC2.47□□□□□ -2.01
CCDC88BA6NC98 MIR320A-201ENST00000385302 82 ntBASIC2.47□□□□□ -2.01
CCDC88BA6NC98 RNA5SP492-201ENST00000411330 114 ntBASIC2.47□□□□□ -2.01
CCDC88BA6NC98 XKRYP6-201ENST00000440468 1116 ntBASIC2.47□□□□□ -2.01
CCDC88BA6NC98 PIGFP3-201ENST00000441918 722 ntBASIC2.47□□□□□ -2.01
CCDC88BA6NC98 XKRYP3-201ENST00000442113 1116 ntBASIC2.47□□□□□ -2.01
CCDC88BA6NC98 SNORD121B-201ENST00000458838 81 ntBASIC2.47□□□□□ -2.01
CCDC88BA6NC98 AC090515.1-201ENST00000465295 476 ntBASIC2.47□□□□□ -2.01
CCDC88BA6NC98 MTCYBP18-201ENST00000501056 747 ntBASIC2.47□□□□□ -2.01
CCDC88BA6NC98 RPL37P25-201ENST00000507308 276 ntBASIC2.47□□□□□ -2.01
CCDC88BA6NC98 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC2.47□□□□□ -2.01
CCDC88BA6NC98 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC2.47□□□□□ -2.01
CCDC88BA6NC98 MAPK10-266ENST00000641066 6555 ntBASIC2.47□□□□□ -2.01
CCDC88BA6NC98 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
CCDC88BA6NC98 Y_RNA.112-201ENST00000363250 102 ntBASIC2.46□□□□□ -2.02
CCDC88BA6NC98 AC090774.1-201ENST00000435925 246 ntBASIC2.46□□□□□ -2.02
CCDC88BA6NC98 COX6CP12-201ENST00000446748 202 ntBASIC2.46□□□□□ -2.02
CCDC88BA6NC98 RPL5P13-201ENST00000462840 709 ntBASIC2.46□□□□□ -2.02
CCDC88BA6NC98 AC135721.1-201ENST00000497954 479 ntBASIC2.46□□□□□ -2.02
CCDC88BA6NC98 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
CCDC88BA6NC98 RNU4ATAC11P-201ENST00000515939 126 ntBASIC2.46□□□□□ -2.02
CCDC88BA6NC98 AP000790.1-201ENST00000528891 737 ntBASIC2.46□□□□□ -2.02
CCDC88BA6NC98 AC091057.2-201ENST00000602594 792 ntBASIC2.46□□□□□ -2.02
CCDC88BA6NC98 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC2.46□□□□□ -2.02
CCDC88BA6NC98 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.46□□□□□ -2.02
CCDC88BA6NC98 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC2.45□□□□□ -2.02
CCDC88BA6NC98 MIR1304-201ENST00000408243 91 ntBASIC2.45□□□□□ -2.02
CCDC88BA6NC98 LSM5-205ENST00000409952 687 ntTSL 4 BASIC2.45□□□□□ -2.02
CCDC88BA6NC98 RFESDP1-201ENST00000422350 461 ntBASIC2.45□□□□□ -2.02
CCDC88BA6NC98 AC022022.1-201ENST00000430304 178 ntBASIC2.45□□□□□ -2.02
CCDC88BA6NC98 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC2.45□□□□□ -2.02
CCDC88BA6NC98 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC2.45□□□□□ -2.02
CCDC88BA6NC98 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC2.45□□□□□ -2.02
CCDC88BA6NC98 AL359740.1-201ENST00000624340 592 ntBASIC2.45□□□□□ -2.02
CCDC88BA6NC98 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC2.45□□□□□ -2.02
CCDC88BA6NC98 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
CCDC88BA6NC98 RPL31P2-201ENST00000413849 377 ntBASIC2.45□□□□□ -2.02
CCDC88BA6NC98 HSPE1P1-201ENST00000421494 318 ntBASIC2.45□□□□□ -2.02
CCDC88BA6NC98 PSMA2P3-201ENST00000429685 675 ntBASIC2.45□□□□□ -2.02
CCDC88BA6NC98 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC2.45□□□□□ -2.02
CCDC88BA6NC98 RPL21P131-201ENST00000497298 483 ntBASIC2.45□□□□□ -2.02
CCDC88BA6NC98 MTCO2P9-201ENST00000503214 694 ntBASIC2.45□□□□□ -2.02
CCDC88BA6NC98 AL354943.1-201ENST00000572103 781 ntBASIC2.45□□□□□ -2.02
CCDC88BA6NC98 AP005136.1-201ENST00000579765 429 ntBASIC2.45□□□□□ -2.02
CCDC88BA6NC98 RMST_2.1-201ENST00000617263 136 ntBASIC2.45□□□□□ -2.02
CCDC88BA6NC98 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.45□□□□□ -2.02
CCDC88BA6NC98 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
CCDC88BA6NC98 MTND4P34-201ENST00000572715 1371 ntBASIC2.44□□□□□ -2.02
CCDC88BA6NC98 RNU1-22P-201ENST00000363334 158 ntBASIC2.44□□□□□ -2.02
CCDC88BA6NC98 SUMO1P4-201ENST00000429430 302 ntBASIC2.44□□□□□ -2.02
CCDC88BA6NC98 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC2.44□□□□□ -2.02
CCDC88BA6NC98 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC2.44□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 134.2 ms