Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 ELOCP4-201ENST00000420090 333 ntBASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 BEND7P1-201ENST00000422058 457 ntBASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 FTH1P1-201ENST00000437933 532 ntBASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 AL645939.1-201ENST00000453429 797 ntBASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 RPL31P58-201ENST00000469001 379 ntBASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 S100A11P1-201ENST00000477525 312 ntBASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 AC079382.1-201ENST00000493346 557 ntBASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 FTH1P21-201ENST00000512179 511 ntBASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 RN7SKP83-201ENST00000516512 178 ntBASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 AC011979.2-201ENST00000527568 352 ntBASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 OR5AQ1P-201ENST00000527596 927 ntBASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 HMGB1P33-201ENST00000563485 527 ntBASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 MTCO3P24-201ENST00000572729 782 ntBASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 AL592436.1-201ENST00000605135 558 ntBASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 SNORA62.6-201ENST00000606322 83 ntBASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 TUG1_1.1-201ENST00000610654 145 ntBASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 AC245517.5-201ENST00000611529 162 ntBASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 AC007014.2-201ENST00000615581 479 ntBASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 TEX41-265ENST00000627785 704 ntTSL 5 BASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 OSBPL9P4-201ENST00000371707 1800 ntBASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
LIMCH1Q9UPQ0 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 RNU6-1085P-201ENST00000363576 107 ntBASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 RNY4P14-201ENST00000363656 96 ntBASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 CRP-202ENST00000368110 667 ntTSL 3 BASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 Y_RNA.402-201ENST00000383972 102 ntBASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 SNORA70C-201ENST00000384538 135 ntBASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 SNORD115-47-201ENST00000391226 86 ntBASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 CALM2P3-201ENST00000400429 449 ntBASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 MIR1277-201ENST00000408536 78 ntBASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 RNA5SP317-201ENST00000410176 116 ntBASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 RNA5SP311-201ENST00000411290 116 ntBASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 AL137014.1-201ENST00000420490 1226 ntBASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 AC092832.1-201ENST00000422934 400 ntBASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 RPL23AP20-201ENST00000447965 421 ntBASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 AC009220.1-201ENST00000451614 275 ntBASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 MTND2P24-201ENST00000453434 806 ntBASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 FPGT-203ENST00000467578 601 ntTSL 2 BASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 RNA5SP315-201ENST00000516340 116 ntBASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 RNA5SP312-201ENST00000517068 116 ntBASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 AL157687.1-201ENST00000554853 619 ntBASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 AC068135.2-201ENST00000569293 1028 ntBASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 AC008277.2-201ENST00000605196 797 ntBASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 MIR6830-201ENST00000636015 70 ntBASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 MIR3688-2-201ENST00000636963 87 ntBASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
LIMCH1Q9UPQ0 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
LIMCH1Q9UPQ0 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC4.46□□□□□ -1.69
LIMCH1Q9UPQ0 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC4.46□□□□□ -1.69
LIMCH1Q9UPQ0 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC4.46□□□□□ -1.69
LIMCH1Q9UPQ0 MAPK10-372ENST00000641954 3413 ntBASIC4.46□□□□□ -1.69
LIMCH1Q9UPQ0 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
LIMCH1Q9UPQ0 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC4.46□□□□□ -1.7
LIMCH1Q9UPQ0 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
LIMCH1Q9UPQ0 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC4.46□□□□□ -1.7
LIMCH1Q9UPQ0 RNU6-1249P-201ENST00000363237 111 ntBASIC4.46□□□□□ -1.7
LIMCH1Q9UPQ0 RNU6-1097P-201ENST00000363586 107 ntBASIC4.46□□□□□ -1.7
LIMCH1Q9UPQ0 RNU6-1283P-201ENST00000365314 105 ntBASIC4.46□□□□□ -1.7
LIMCH1Q9UPQ0 RNU6-516P-201ENST00000411381 104 ntBASIC4.46□□□□□ -1.7
LIMCH1Q9UPQ0 AC092447.6-201ENST00000414578 210 ntBASIC4.46□□□□□ -1.7
LIMCH1Q9UPQ0 RPS12P23-201ENST00000419579 400 ntBASIC4.46□□□□□ -1.7
LIMCH1Q9UPQ0 OR1AA1P-201ENST00000419597 916 ntBASIC4.46□□□□□ -1.7
LIMCH1Q9UPQ0 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC4.46□□□□□ -1.7
LIMCH1Q9UPQ0 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
LIMCH1Q9UPQ0 MTND1P2-201ENST00000430604 821 ntBASIC4.46□□□□□ -1.7
LIMCH1Q9UPQ0 H2AFZP6-201ENST00000444403 394 ntBASIC4.46□□□□□ -1.7
LIMCH1Q9UPQ0 TPT1P14-201ENST00000448018 505 ntBASIC4.46□□□□□ -1.7
LIMCH1Q9UPQ0 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms