Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
CCDC40Q4G0X9 PSMA2P1-201ENST00000526365 646 ntBASIC3.2□□□□□ -1.9
CCDC40Q4G0X9 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC3.2□□□□□ -1.9
CCDC40Q4G0X9 AC034105.3-201ENST00000565294 442 ntBASIC3.2□□□□□ -1.9
CCDC40Q4G0X9 AC105224.1-201ENST00000587055 421 ntBASIC3.2□□□□□ -1.9
CCDC40Q4G0X9 GLUD1P4-201ENST00000590914 418 ntBASIC3.2□□□□□ -1.9
CCDC40Q4G0X9 AL160237.3-201ENST00000604114 1013 ntBASIC3.2□□□□□ -1.9
CCDC40Q4G0X9 HSPE1P7-201ENST00000604681 321 ntBASIC3.2□□□□□ -1.9
CCDC40Q4G0X9 AC012468.1-201ENST00000604888 430 ntBASIC3.2□□□□□ -1.9
CCDC40Q4G0X9 DUXAP10-204ENST00000612052 616 ntBASIC3.2□□□□□ -1.9
CCDC40Q4G0X9 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.2□□□□□ -1.9
CCDC40Q4G0X9 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.2□□□□□ -1.9
CCDC40Q4G0X9 AL445264.1-201ENST00000621719 171 ntBASIC3.2□□□□□ -1.9
CCDC40Q4G0X9 AC099654.9-201ENST00000637055 678 ntBASIC3.2□□□□□ -1.9
CCDC40Q4G0X9 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.2□□□□□ -1.9
CCDC40Q4G0X9 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC40Q4G0X9 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.19□□□□□ -1.9
CCDC40Q4G0X9 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.19□□□□□ -1.9
CCDC40Q4G0X9 AC009487.2-201ENST00000420969 6821 ntBASIC3.19□□□□□ -1.9
CCDC40Q4G0X9 RPL9P7-201ENST00000330965 580 ntBASIC3.19□□□□□ -1.9
CCDC40Q4G0X9 DEFB108F-201ENST00000344638 222 ntBASIC3.19□□□□□ -1.9
CCDC40Q4G0X9 SNORA9.2-201ENST00000365361 133 ntBASIC3.19□□□□□ -1.9
CCDC40Q4G0X9 AL451074.5-201ENST00000415894 435 ntBASIC3.19□□□□□ -1.9
CCDC40Q4G0X9 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC3.19□□□□□ -1.9
CCDC40Q4G0X9 NDUFB4P6-201ENST00000436819 366 ntBASIC3.19□□□□□ -1.9
CCDC40Q4G0X9 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC3.19□□□□□ -1.9
CCDC40Q4G0X9 RPL23AP58-201ENST00000440453 469 ntBASIC3.19□□□□□ -1.9
CCDC40Q4G0X9 AL592447.1-201ENST00000447592 540 ntBASIC3.19□□□□□ -1.9
CCDC40Q4G0X9 RPL37P4-201ENST00000448908 268 ntBASIC3.19□□□□□ -1.9
CCDC40Q4G0X9 ZNF886P-201ENST00000450781 723 ntBASIC3.19□□□□□ -1.9
CCDC40Q4G0X9 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.19□□□□□ -1.9
CCDC40Q4G0X9 BX322784.1-201ENST00000455793 1077 ntBASIC3.19□□□□□ -1.9
CCDC40Q4G0X9 RPL31P50-201ENST00000471002 296 ntBASIC3.19□□□□□ -1.9
CCDC40Q4G0X9 AC022483.1-201ENST00000514020 567 ntBASIC3.19□□□□□ -1.9
CCDC40Q4G0X9 AC103783.1-201ENST00000520506 373 ntBASIC3.19□□□□□ -1.9
CCDC40Q4G0X9 DEFB108D-201ENST00000527787 222 ntBASIC3.19□□□□□ -1.9
CCDC40Q4G0X9 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC40Q4G0X9 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.19□□□□□ -1.9
CCDC40Q4G0X9 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC40Q4G0X9 AC079411.1-201ENST00000565441 795 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CCDC40Q4G0X9 MTCO3P13-201ENST00000577757 781 ntBASIC3.19□□□□□ -1.9
CCDC40Q4G0X9 OR4K7P-201ENST00000580232 945 ntBASIC3.19□□□□□ -1.9
CCDC40Q4G0X9 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC3.19□□□□□ -1.9
CCDC40Q4G0X9 AC091057.3-201ENST00000602684 733 ntBASIC3.19□□□□□ -1.9
CCDC40Q4G0X9 DUXAP3-201ENST00000603616 594 ntBASIC3.19□□□□□ -1.9
CCDC40Q4G0X9 YPEL5P2-201ENST00000605553 359 ntBASIC3.19□□□□□ -1.9
CCDC40Q4G0X9 AP000254.1-201ENST00000609934 520 ntBASIC3.19□□□□□ -1.9
CCDC40Q4G0X9 AC107075.1-201ENST00000613695 314 ntBASIC3.19□□□□□ -1.9
CCDC40Q4G0X9 AL590099.1-201ENST00000615276 138 ntBASIC3.19□□□□□ -1.9
CCDC40Q4G0X9 AL450472.3-201ENST00000615578 367 ntBASIC3.19□□□□□ -1.9
CCDC40Q4G0X9 AL357080.1-201ENST00000617394 239 ntBASIC3.19□□□□□ -1.9
CCDC40Q4G0X9 GMFB-210ENST00000628554 639 ntTSL 4 BASIC3.19□□□□□ -1.9
CCDC40Q4G0X9 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC3.19□□□□□ -1.9
CCDC40Q4G0X9 AL390862.1-201ENST00000635467 1469 ntBASIC3.18□□□□□ -1.9
CCDC40Q4G0X9 MIR208A-201ENST00000362287 71 ntBASIC3.18□□□□□ -1.9
CCDC40Q4G0X9 RNU1-35P-201ENST00000362782 153 ntBASIC3.18□□□□□ -1.9
CCDC40Q4G0X9 Y_RNA.234-201ENST00000364409 97 ntBASIC3.18□□□□□ -1.9
CCDC40Q4G0X9 SNORD116.1-201ENST00000365628 92 ntBASIC3.18□□□□□ -1.9
CCDC40Q4G0X9 RPL23AP29-201ENST00000397284 453 ntBASIC3.18□□□□□ -1.9
CCDC40Q4G0X9 SNORD88.1-201ENST00000408684 91 ntBASIC3.18□□□□□ -1.9
CCDC40Q4G0X9 ATG3P1-201ENST00000419507 911 ntBASIC3.18□□□□□ -1.9
CCDC40Q4G0X9 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC40Q4G0X9 SAR1AP4-201ENST00000429225 591 ntBASIC3.18□□□□□ -1.9
CCDC40Q4G0X9 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
CCDC40Q4G0X9 AL031313.1-201ENST00000448435 256 ntBASIC3.18□□□□□ -1.9
CCDC40Q4G0X9 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC3.18□□□□□ -1.9
CCDC40Q4G0X9 ZNF736P4Y-201ENST00000454995 1243 ntBASIC3.18□□□□□ -1.9
CCDC40Q4G0X9 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC40Q4G0X9 AC005410.1-202ENST00000460347 485 ntBASIC3.18□□□□□ -1.9
CCDC40Q4G0X9 RPL31P60-201ENST00000478450 367 ntBASIC3.18□□□□□ -1.9
CCDC40Q4G0X9 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC40Q4G0X9 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.18□□□□□ -1.9
CCDC40Q4G0X9 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC40Q4G0X9 DEFB131D-201ENST00000526803 184 ntBASIC3.18□□□□□ -1.9
CCDC40Q4G0X9 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.18□□□□□ -1.9
CCDC40Q4G0X9 AC023813.2-201ENST00000564321 469 ntBASIC3.18□□□□□ -1.9
CCDC40Q4G0X9 MIR3908-201ENST00000579798 126 ntBASIC3.18□□□□□ -1.9
CCDC40Q4G0X9 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC3.18□□□□□ -1.9
CCDC40Q4G0X9 AC006539.2-201ENST00000601729 572 ntBASIC3.18□□□□□ -1.9
CCDC40Q4G0X9 AC131235.4-201ENST00000609288 620 ntBASIC3.18□□□□□ -1.9
CCDC40Q4G0X9 AL391834.2-201ENST00000609982 546 ntBASIC3.18□□□□□ -1.9
CCDC40Q4G0X9 AC022306.3-201ENST00000619930 550 ntBASIC3.18□□□□□ -1.9
CCDC40Q4G0X9 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
CCDC40Q4G0X9 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CCDC40Q4G0X9 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
CCDC40Q4G0X9 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CCDC40Q4G0X9 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC40Q4G0X9 AC000403.1-201ENST00000613696 3585 ntBASIC3.17□□□□□ -1.9
CCDC40Q4G0X9 RNU6-621P-201ENST00000364752 109 ntBASIC3.17□□□□□ -1.9
CCDC40Q4G0X9 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC3.17□□□□□ -1.9
CCDC40Q4G0X9 MIR1289-1-201ENST00000408836 144 ntBASIC3.17□□□□□ -1.9
CCDC40Q4G0X9 CCDC58P2-201ENST00000417131 366 ntBASIC3.17□□□□□ -1.9
CCDC40Q4G0X9 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.17□□□□□ -1.9
CCDC40Q4G0X9 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC40Q4G0X9 AL512649.1-201ENST00000428997 581 ntBASIC3.17□□□□□ -1.9
CCDC40Q4G0X9 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC3.17□□□□□ -1.9
CCDC40Q4G0X9 AC234775.1-201ENST00000454247 670 ntBASIC3.17□□□□□ -1.9
CCDC40Q4G0X9 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC3.17□□□□□ -1.9
CCDC40Q4G0X9 AL590639.1-201ENST00000456484 337 ntBASIC3.17□□□□□ -1.9
CCDC40Q4G0X9 MTND1P16-201ENST00000465177 898 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms