Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 ISCA1P3-201ENST00000577104 373 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 AC090615.1-201ENST00000577519 154 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 SNORD84-203ENST00000584275 78 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 AC008751.2-201ENST00000597885 980 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 SNRPGP15-201ENST00000600149 222 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 AC128687.1-201ENST00000605304 619 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 AC078883.4-201ENST00000623218 367 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 ZNF33BP1-201ENST00000452497 1834 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 MTND4P34-201ENST00000572715 1371 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 AP000526.1-201ENST00000603308 1388 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 AC066616.2-201ENST00000559334 1481 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 AF117829.1-206ENST00000621883 3802 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 MIR423-201ENST00000362201 94 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 RNU6-1181P-201ENST00000384191 106 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 U3.29-201ENST00000391296 212 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 RSL24D1P4-201ENST00000400938 484 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 AL593851.1-201ENST00000426171 157 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 RPL21P112-201ENST00000434403 463 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 EEF1E1P1-201ENST00000446998 430 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 Y_RNA.638-201ENST00000459374 113 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 MTCO2P6-201ENST00000463134 685 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 MTATP6P15-201ENST00000527233 835 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 OR6C7P-201ENST00000547875 934 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 AC126177.3-201ENST00000551839 688 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 AC008015.1-201ENST00000555505 465 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 AC138761.3-201ENST00000579993 334 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 AL035413.2-201ENST00000604801 525 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 AC009039.2-201ENST00000624524 529 ntBASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC3.7□□□□□ -1.82
ZNF541Q9H0D2 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 OR4G11P-202ENST00000642116 1414 ntBASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 RNU6-462P-201ENST00000362659 105 ntBASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 RNA5SP88-201ENST00000365560 109 ntBASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 RNY3P9-201ENST00000384727 106 ntBASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 AL049545.1-201ENST00000401856 572 ntBASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 CYCSP45-201ENST00000402289 315 ntBASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 AL583834.1-201ENST00000406943 343 ntBASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 PIGPP2-201ENST00000411569 458 ntBASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 MYL8P-204ENST00000431574 518 ntBASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 RPL37P4-201ENST00000448908 268 ntBASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 AL133217.1-201ENST00000450980 425 ntBASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 EEF1B2P7-201ENST00000451177 676 ntBASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 MRPS31P2-201ENST00000451581 518 ntBASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 ARPC3P2-201ENST00000457786 533 ntBASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 RNU7-125P-201ENST00000458760 62 ntBASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 snoU13.8-201ENST00000458890 104 ntBASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 snoU13.3-201ENST00000459441 104 ntBASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 AC010486.2-201ENST00000505572 483 ntBASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 PCBP2P3-201ENST00000509726 843 ntBASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 RNU2-58P-201ENST00000516403 183 ntBASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 AP004371.1-201ENST00000525240 214 ntBASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 AC079600.2-201ENST00000550076 130 ntBASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 AC002400.1-201ENST00000569310 726 ntBASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 AC010928.3-201ENST00000587712 541 ntBASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 AL031176.1-201ENST00000604554 466 ntBASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 AC007619.2-201ENST00000605743 379 ntBASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 VIS1.1-201ENST00000610517 203 ntBASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 AL450489.1-201ENST00000612071 468 ntBASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 AC097655.1-201ENST00000635075 318 ntBASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 AC138649.5-201ENST00000637456 137 ntBASIC3.69□□□□□ -1.82
ZNF541Q9H0D2 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.69□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms