Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC048347.1-201ENST00000624621 427 ntBASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 AC006378.2-201ENST00000623178 2476 ntBASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC3Q9BQI4 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 GNG5P1-201ENST00000255500 204 ntBASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 RNU6-600P-201ENST00000362524 99 ntBASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 RNU6-289P-201ENST00000364093 107 ntBASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 RNU6-769P-201ENST00000384407 104 ntBASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 MOB4-205ENST00000409916 829 ntTSL 3 BASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 LSM1P1-201ENST00000438629 273 ntBASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 ISCA1P2-201ENST00000438679 421 ntBASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 AL117351.1-201ENST00000438864 766 ntBASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 AP000542.1-201ENST00000448473 371 ntBASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 OR6C5P-201ENST00000452388 923 ntBASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 RPL30P9-201ENST00000465586 330 ntBASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 AC084357.1-201ENST00000473404 255 ntBASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 AC109486.1-201ENST00000486833 374 ntBASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 RPL7P23-201ENST00000493874 747 ntBASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 OR5BM1P-201ENST00000512021 366 ntBASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 HIGD1AP10-201ENST00000527837 282 ntBASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 MIR5680-201ENST00000577577 84 ntBASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 WISP1-OT1-201ENST00000602893 642 ntBASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 AC097065.2-201ENST00000608159 533 ntBASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 AL590282.1-201ENST00000610379 1136 ntBASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 XIST_intron.1-201ENST00000619444 68 ntBASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 AP001350.1-201ENST00000601906 1524 ntBASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC3Q9BQI4 MFSD8-233ENST00000641482 4860 ntBASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 Z83843.1-201ENST00000604070 3685 ntBASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 SNORA51.2-201ENST00000364595 132 ntBASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 RNU6-1181P-201ENST00000384191 106 ntBASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 RNU6-920P-201ENST00000410926 92 ntBASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 RHEBP3-201ENST00000411920 351 ntBASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 AC017079.2-201ENST00000416102 485 ntBASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 AL137014.1-201ENST00000420490 1226 ntBASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 AC109583.1-201ENST00000432156 268 ntBASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 AC006028.1-201ENST00000438379 402 ntBASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 AL512286.1-201ENST00000439244 400 ntBASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 AC010468.1-201ENST00000461022 817 ntBASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 RN7SL330P-201ENST00000469709 307 ntBASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 RPS3AP50-201ENST00000487064 803 ntBASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 AP001025.2-201ENST00000490908 477 ntBASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 THAP6-203ENST00000502620 582 ntTSL 3 BASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 PHBP14-201ENST00000512887 367 ntBASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 RNU6-759P-201ENST00000516740 103 ntBASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 SNORA31.20-201ENST00000517111 133 ntBASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 AP003497.1-201ENST00000528472 562 ntBASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 AC109635.4-202ENST00000531666 412 ntBASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 AC087481.2-201ENST00000565492 330 ntBASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 AC011260.1-201ENST00000578420 472 ntBASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 MIR3915-201ENST00000578518 97 ntBASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 MIR544B-201ENST00000582372 78 ntBASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 SNORD84-203ENST00000584275 78 ntBASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC3.31□□□□□ -1.88
CCDC3Q9BQI4 XIAPP1-201ENST00000603162 600 ntBASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 90.7 ms