Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 RNA5SP291-201ENST00000517222 105 ntBASIC3.02□□□□□ -1.93
ZNF540Q8NDQ6 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.02□□□□□ -1.93
ZNF540Q8NDQ6 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.02□□□□□ -1.93
ZNF540Q8NDQ6 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC3.02□□□□□ -1.93
ZNF540Q8NDQ6 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.02□□□□□ -1.93
ZNF540Q8NDQ6 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC3.02□□□□□ -1.93
ZNF540Q8NDQ6 AC015917.1-201ENST00000579654 510 ntBASIC3.02□□□□□ -1.93
ZNF540Q8NDQ6 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.02□□□□□ -1.93
ZNF540Q8NDQ6 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC3.02□□□□□ -1.93
ZNF540Q8NDQ6 AC012468.1-201ENST00000604888 430 ntBASIC3.02□□□□□ -1.93
ZNF540Q8NDQ6 AL160281.1-201ENST00000605307 311 ntBASIC3.02□□□□□ -1.93
ZNF540Q8NDQ6 UCA1.1-201ENST00000620952 75 ntBASIC3.02□□□□□ -1.93
ZNF540Q8NDQ6 AC002550.2-201ENST00000621246 394 ntBASIC3.02□□□□□ -1.93
ZNF540Q8NDQ6 AC023510.2-201ENST00000622162 746 ntBASIC3.02□□□□□ -1.93
ZNF540Q8NDQ6 AC008443.7-201ENST00000622195 246 ntBASIC3.02□□□□□ -1.93
ZNF540Q8NDQ6 AP003476.1-201ENST00000623984 516 ntBASIC3.02□□□□□ -1.93
ZNF540Q8NDQ6 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.02□□□□□ -1.93
ZNF540Q8NDQ6 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
ZNF540Q8NDQ6 MTND5P24-201ENST00000438892 1767 ntBASIC3.02□□□□□ -1.93
ZNF540Q8NDQ6 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.02□□□□□ -1.93
ZNF540Q8NDQ6 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 AL672167.1-206ENST00000356293 943 ntBASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 SNORA46-201ENST00000384762 135 ntBASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 MIR887-201ENST00000401258 79 ntBASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 RN7SKP123-201ENST00000410732 291 ntBASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 RN7SKP58-201ENST00000411010 305 ntBASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 AC069282.1-201ENST00000411911 526 ntBASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 AC245054.2-201ENST00000415639 319 ntBASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 PPP1R11P2-201ENST00000423543 382 ntBASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 AC097713.2-201ENST00000430199 356 ntBASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 UQCRHP3-201ENST00000451503 251 ntBASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 HMGB1P28-201ENST00000507778 552 ntBASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 SNORA31.22-201ENST00000517204 135 ntBASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 SUB1P1-201ENST00000524415 382 ntBASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 LRRC6P1-201ENST00000532188 885 ntBASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 AC007536.1-201ENST00000533382 349 ntBASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 AC090888.1-201ENST00000561335 1141 ntBASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 MIR3922-201ENST00000585192 84 ntBASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 AC091057.3-201ENST00000602684 733 ntBASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 AL390208.1-201ENST00000605885 644 ntBASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 uc_338.1-201ENST00000612113 180 ntBASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 RNU6-1192P-201ENST00000612197 107 ntBASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 AL357080.1-201ENST00000617394 239 ntBASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 RNU6-489P-201ENST00000618289 107 ntBASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 AC091903.1-201ENST00000624322 454 ntBASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 OR1S1-201ENST00000624470 978 ntBASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 AC010608.3-201ENST00000625048 527 ntBASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 AC099654.8-201ENST00000637757 681 ntBASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 MTND5P19-201ENST00000424872 1794 ntBASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
ZNF540Q8NDQ6 PAPPA-AS1-201ENST00000445861 2450 ntBASIC3□□□□□ -1.93
ZNF540Q8NDQ6 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3□□□□□ -1.93
ZNF540Q8NDQ6 CR383658.2-201ENST00000547576 1525 ntBASIC3□□□□□ -1.93
ZNF540Q8NDQ6 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
ZNF540Q8NDQ6 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
ZNF540Q8NDQ6 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC3□□□□□ -1.93
ZNF540Q8NDQ6 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC3□□□□□ -1.93
ZNF540Q8NDQ6 RNU6-270P-201ENST00000364131 105 ntBASIC3□□□□□ -1.93
ZNF540Q8NDQ6 RNA5SP267-201ENST00000364893 126 ntBASIC3□□□□□ -1.93
ZNF540Q8NDQ6 RNU6-741P-201ENST00000383889 107 ntBASIC3□□□□□ -1.93
ZNF540Q8NDQ6 RNU1-109P-201ENST00000383960 147 ntBASIC3□□□□□ -1.93
ZNF540Q8NDQ6 SNORA9-201ENST00000384215 133 ntBASIC3□□□□□ -1.93
ZNF540Q8NDQ6 RNU6-925P-201ENST00000384629 104 ntBASIC3□□□□□ -1.93
ZNF540Q8NDQ6 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC3□□□□□ -1.93
ZNF540Q8NDQ6 DHFRP6-201ENST00000401776 268 ntBASIC3□□□□□ -1.93
ZNF540Q8NDQ6 RPL19P1-201ENST00000411635 428 ntBASIC3□□□□□ -1.93
ZNF540Q8NDQ6 TPMTP3-201ENST00000411928 735 ntBASIC3□□□□□ -1.93
ZNF540Q8NDQ6 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3□□□□□ -1.93
ZNF540Q8NDQ6 C1DP1-201ENST00000426049 402 ntBASIC3□□□□□ -1.93
ZNF540Q8NDQ6 OR2AS1P-201ENST00000427827 319 ntBASIC3□□□□□ -1.93
ZNF540Q8NDQ6 HMGB3P6-201ENST00000444896 598 ntBASIC3□□□□□ -1.93
ZNF540Q8NDQ6 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC3□□□□□ -1.93
ZNF540Q8NDQ6 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3□□□□□ -1.93
ZNF540Q8NDQ6 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC3□□□□□ -1.93
ZNF540Q8NDQ6 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC3□□□□□ -1.93
ZNF540Q8NDQ6 VTRNA2-2P-201ENST00000516091 103 ntBASIC3□□□□□ -1.93
ZNF540Q8NDQ6 RNU6-1256P-201ENST00000516539 103 ntBASIC3□□□□□ -1.93
ZNF540Q8NDQ6 SCARNA1-201ENST00000517138 166 ntBASIC3□□□□□ -1.93
ZNF540Q8NDQ6 RN7SKP40-201ENST00000517211 242 ntBASIC3□□□□□ -1.93
ZNF540Q8NDQ6 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC3□□□□□ -1.93
ZNF540Q8NDQ6 AP002748.2-201ENST00000528671 348 ntBASIC3□□□□□ -1.93
ZNF540Q8NDQ6 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3□□□□□ -1.93
ZNF540Q8NDQ6 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 83 ms