Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 Y_RNA.234-201ENST00000364409 97 ntBASIC3.2□□□□□ -1.9
HDDC3Q8N4P3 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.2□□□□□ -1.9
HDDC3Q8N4P3 RNU6-413P-201ENST00000384115 107 ntBASIC3.2□□□□□ -1.9
HDDC3Q8N4P3 AL031121.1-201ENST00000406553 254 ntBASIC3.2□□□□□ -1.9
HDDC3Q8N4P3 RNA5SP80-201ENST00000410475 111 ntBASIC3.2□□□□□ -1.9
HDDC3Q8N4P3 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.2□□□□□ -1.9
HDDC3Q8N4P3 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.2□□□□□ -1.9
HDDC3Q8N4P3 AC234781.2-201ENST00000426370 994 ntBASIC3.2□□□□□ -1.9
HDDC3Q8N4P3 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC3.2□□□□□ -1.9
HDDC3Q8N4P3 MTCO1P53-201ENST00000441633 699 ntBASIC3.2□□□□□ -1.9
HDDC3Q8N4P3 AL358794.1-201ENST00000445689 381 ntBASIC3.2□□□□□ -1.9
HDDC3Q8N4P3 MTND2P24-201ENST00000453434 806 ntBASIC3.2□□□□□ -1.9
HDDC3Q8N4P3 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC3.2□□□□□ -1.9
HDDC3Q8N4P3 AC010099.1-201ENST00000455434 375 ntBASIC3.2□□□□□ -1.9
HDDC3Q8N4P3 AC011979.1-201ENST00000472300 483 ntBASIC3.2□□□□□ -1.9
HDDC3Q8N4P3 AL049874.1-201ENST00000489560 388 ntBASIC3.2□□□□□ -1.9
HDDC3Q8N4P3 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC3.2□□□□□ -1.9
HDDC3Q8N4P3 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC3.2□□□□□ -1.9
HDDC3Q8N4P3 AC008837.2-201ENST00000513076 418 ntBASIC3.2□□□□□ -1.9
HDDC3Q8N4P3 AC006499.2-201ENST00000513470 337 ntBASIC3.2□□□□□ -1.9
HDDC3Q8N4P3 CD69-203ENST00000536709 1020 ntTSL 2 BASIC3.2□□□□□ -1.9
HDDC3Q8N4P3 AC011602.1-201ENST00000546484 331 ntBASIC3.2□□□□□ -1.9
HDDC3Q8N4P3 AADACP1-206ENST00000561502 1193 ntBASIC3.2□□□□□ -1.9
HDDC3Q8N4P3 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.2□□□□□ -1.9
HDDC3Q8N4P3 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.2□□□□□ -1.9
HDDC3Q8N4P3 AC010653.1-201ENST00000571108 881 ntBASIC3.2□□□□□ -1.9
HDDC3Q8N4P3 MIR4672-201ENST00000583126 81 ntBASIC3.2□□□□□ -1.9
HDDC3Q8N4P3 UBL5P2-201ENST00000583788 219 ntBASIC3.2□□□□□ -1.9
HDDC3Q8N4P3 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC3.2□□□□□ -1.9
HDDC3Q8N4P3 BNIP3P26-201ENST00000600827 554 ntBASIC3.2□□□□□ -1.9
HDDC3Q8N4P3 AC004067.1-201ENST00000608733 700 ntBASIC3.2□□□□□ -1.9
HDDC3Q8N4P3 AL450489.1-201ENST00000612071 468 ntBASIC3.2□□□□□ -1.9
HDDC3Q8N4P3 AC006213.4-201ENST00000616184 634 ntBASIC3.2□□□□□ -1.9
HDDC3Q8N4P3 MIR6130-201ENST00000619419 109 ntBASIC3.2□□□□□ -1.9
HDDC3Q8N4P3 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.2□□□□□ -1.9
HDDC3Q8N4P3 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC3.2□□□□□ -1.9
HDDC3Q8N4P3 AC007496.3-201ENST00000624987 3443 ntBASIC3.2□□□□□ -1.9
HDDC3Q8N4P3 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HDDC3Q8N4P3 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HDDC3Q8N4P3 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
HDDC3Q8N4P3 AC000403.1-201ENST00000613696 3585 ntBASIC3.19□□□□□ -1.9
HDDC3Q8N4P3 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
HDDC3Q8N4P3 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HDDC3Q8N4P3 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.19□□□□□ -1.9
HDDC3Q8N4P3 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC3.19□□□□□ -1.9
HDDC3Q8N4P3 AP002088.1-201ENST00000382740 395 ntBASIC3.19□□□□□ -1.9
HDDC3Q8N4P3 RNA5SP229-201ENST00000410809 99 ntBASIC3.19□□□□□ -1.9
HDDC3Q8N4P3 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC3.19□□□□□ -1.9
HDDC3Q8N4P3 RPL7L1P10-201ENST00000427790 463 ntBASIC3.19□□□□□ -1.9
HDDC3Q8N4P3 RPL23AP69-201ENST00000431134 458 ntBASIC3.19□□□□□ -1.9
HDDC3Q8N4P3 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC3.19□□□□□ -1.9
HDDC3Q8N4P3 AC007327.1-201ENST00000447461 264 ntBASIC3.19□□□□□ -1.9
HDDC3Q8N4P3 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC3.19□□□□□ -1.9
HDDC3Q8N4P3 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.19□□□□□ -1.9
HDDC3Q8N4P3 ELOCP23-201ENST00000452014 332 ntBASIC3.19□□□□□ -1.9
HDDC3Q8N4P3 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.19□□□□□ -1.9
HDDC3Q8N4P3 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HDDC3Q8N4P3 BX322784.1-201ENST00000455793 1077 ntBASIC3.19□□□□□ -1.9
HDDC3Q8N4P3 HSPE1P6-201ENST00000479457 291 ntBASIC3.19□□□□□ -1.9
HDDC3Q8N4P3 RPS4XP22-201ENST00000480755 780 ntBASIC3.19□□□□□ -1.9
HDDC3Q8N4P3 OR2A20P-203ENST00000498397 1268 ntBASIC3.19□□□□□ -1.9
HDDC3Q8N4P3 AC010486.1-201ENST00000511793 424 ntBASIC3.19□□□□□ -1.9
HDDC3Q8N4P3 AC087276.1-201ENST00000529659 480 ntBASIC3.19□□□□□ -1.9
HDDC3Q8N4P3 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC3.19□□□□□ -1.9
HDDC3Q8N4P3 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC3.19□□□□□ -1.9
HDDC3Q8N4P3 AL157394.1-201ENST00000562983 1224 ntBASIC3.19□□□□□ -1.9
HDDC3Q8N4P3 AC104984.5-201ENST00000586878 94 ntBASIC3.19□□□□□ -1.9
HDDC3Q8N4P3 AL158211.4-201ENST00000606988 584 ntBASIC3.19□□□□□ -1.9
HDDC3Q8N4P3 AC004832.5-201ENST00000608677 401 ntBASIC3.19□□□□□ -1.9
HDDC3Q8N4P3 AL138478.1-201ENST00000612252 832 ntBASIC3.19□□□□□ -1.9
HDDC3Q8N4P3 uc_338.25-201ENST00000613756 156 ntBASIC3.19□□□□□ -1.9
HDDC3Q8N4P3 AL357080.1-201ENST00000617394 239 ntBASIC3.19□□□□□ -1.9
HDDC3Q8N4P3 AC099506.2-201ENST00000623074 221 ntBASIC3.19□□□□□ -1.9
HDDC3Q8N4P3 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
HDDC3Q8N4P3 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.19□□□□□ -1.9
HDDC3Q8N4P3 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
HDDC3Q8N4P3 AL390862.1-201ENST00000635467 1469 ntBASIC3.18□□□□□ -1.9
HDDC3Q8N4P3 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
HDDC3Q8N4P3 RNU1-75P-201ENST00000347264 129 ntBASIC3.18□□□□□ -1.9
HDDC3Q8N4P3 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
HDDC3Q8N4P3 RNU5E-10P-201ENST00000363506 118 ntBASIC3.18□□□□□ -1.9
HDDC3Q8N4P3 RNA5SP126-201ENST00000365092 109 ntBASIC3.18□□□□□ -1.9
HDDC3Q8N4P3 SNORA7.4-201ENST00000384249 137 ntBASIC3.18□□□□□ -1.9
HDDC3Q8N4P3 ATG3P1-201ENST00000419507 911 ntBASIC3.18□□□□□ -1.9
HDDC3Q8N4P3 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC3.18□□□□□ -1.9
HDDC3Q8N4P3 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC3.18□□□□□ -1.9
HDDC3Q8N4P3 AC090774.1-201ENST00000435925 246 ntBASIC3.18□□□□□ -1.9
HDDC3Q8N4P3 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC3.18□□□□□ -1.9
HDDC3Q8N4P3 MTND1P16-201ENST00000465177 898 ntBASIC3.18□□□□□ -1.9
HDDC3Q8N4P3 SETP11-201ENST00000473027 690 ntBASIC3.18□□□□□ -1.9
HDDC3Q8N4P3 RPS26P21-201ENST00000475397 348 ntBASIC3.18□□□□□ -1.9
HDDC3Q8N4P3 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC3.18□□□□□ -1.9
HDDC3Q8N4P3 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC3.18□□□□□ -1.9
HDDC3Q8N4P3 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC3.18□□□□□ -1.9
HDDC3Q8N4P3 OR6C7P-201ENST00000547875 934 ntBASIC3.18□□□□□ -1.9
HDDC3Q8N4P3 AC090695.1-201ENST00000561269 1222 ntBASIC3.18□□□□□ -1.9
HDDC3Q8N4P3 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.18□□□□□ -1.9
HDDC3Q8N4P3 AF129408.1-201ENST00000608767 431 ntBASIC3.18□□□□□ -1.9
HDDC3Q8N4P3 AC107294.1-201ENST00000609524 467 ntBASIC3.18□□□□□ -1.9
HDDC3Q8N4P3 AL121895.2-201ENST00000619558 447 ntBASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 148.8 ms