Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 C1DP4-201ENST00000455429 424 ntBASIC3.38□□□□□ -1.87
LMX1BO60663 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC3.38□□□□□ -1.87
LMX1BO60663 TRBV12-2-201ENST00000489763 344 ntBASIC3.38□□□□□ -1.87
LMX1BO60663 AC117522.1-201ENST00000509821 380 ntBASIC3.38□□□□□ -1.87
LMX1BO60663 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC3.38□□□□□ -1.87
LMX1BO60663 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.38□□□□□ -1.87
LMX1BO60663 AC016065.2-201ENST00000514530 444 ntBASIC3.38□□□□□ -1.87
LMX1BO60663 RNA5SP208-201ENST00000516156 78 ntBASIC3.38□□□□□ -1.87
LMX1BO60663 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC3.38□□□□□ -1.87
LMX1BO60663 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC3.38□□□□□ -1.87
LMX1BO60663 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC3.38□□□□□ -1.87
LMX1BO60663 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC3.38□□□□□ -1.87
LMX1BO60663 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC3.38□□□□□ -1.87
LMX1BO60663 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC3.38□□□□□ -1.87
LMX1BO60663 AC123904.2-201ENST00000548059 300 ntBASIC3.38□□□□□ -1.87
LMX1BO60663 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC3.38□□□□□ -1.87
LMX1BO60663 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC3.38□□□□□ -1.87
LMX1BO60663 CENPUP2-201ENST00000555897 1186 ntBASIC3.38□□□□□ -1.87
LMX1BO60663 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.38□□□□□ -1.87
LMX1BO60663 AC090877.1-201ENST00000561418 344 ntBASIC3.38□□□□□ -1.87
LMX1BO60663 HMGB1P33-201ENST00000563485 527 ntBASIC3.38□□□□□ -1.87
LMX1BO60663 MIR4504-201ENST00000577413 92 ntBASIC3.38□□□□□ -1.87
LMX1BO60663 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC3.38□□□□□ -1.87
LMX1BO60663 AC011816.2-201ENST00000607089 556 ntBASIC3.38□□□□□ -1.87
LMX1BO60663 AC017083.3-201ENST00000609955 700 ntBASIC3.38□□□□□ -1.87
LMX1BO60663 AC025253.1-201ENST00000613623 543 ntBASIC3.38□□□□□ -1.87
LMX1BO60663 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC3.38□□□□□ -1.87
LMX1BO60663 AL359314.1-201ENST00000616913 261 ntBASIC3.38□□□□□ -1.87
LMX1BO60663 AC091905.1-201ENST00000624400 311 ntBASIC3.38□□□□□ -1.87
LMX1BO60663 AC027287.1-201ENST00000553115 1453 ntBASIC3.38□□□□□ -1.87
LMX1BO60663 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
LMX1BO60663 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC3.38□□□□□ -1.87
LMX1BO60663 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC3.38□□□□□ -1.87
LMX1BO60663 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
LMX1BO60663 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
LMX1BO60663 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.37□□□□□ -1.87
LMX1BO60663 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
LMX1BO60663 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
LMX1BO60663 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.37□□□□□ -1.87
LMX1BO60663 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.37□□□□□ -1.87
LMX1BO60663 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
LMX1BO60663 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC3.37□□□□□ -1.87
LMX1BO60663 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
LMX1BO60663 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.37□□□□□ -1.87
LMX1BO60663 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
LMX1BO60663 RNU1-18P-201ENST00000363062 164 ntBASIC3.37□□□□□ -1.87
LMX1BO60663 RN7SKP44-201ENST00000363602 316 ntBASIC3.37□□□□□ -1.87
LMX1BO60663 RNU6-694P-201ENST00000364071 147 ntBASIC3.37□□□□□ -1.87
LMX1BO60663 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC3.37□□□□□ -1.87
LMX1BO60663 RNU6-730P-201ENST00000383954 104 ntBASIC3.37□□□□□ -1.87
LMX1BO60663 Y_RNA.453-201ENST00000384223 109 ntBASIC3.37□□□□□ -1.87
LMX1BO60663 Y_RNA.548-201ENST00000384656 105 ntBASIC3.37□□□□□ -1.87
LMX1BO60663 RPL31P1-201ENST00000398116 372 ntBASIC3.37□□□□□ -1.87
LMX1BO60663 RPL31P52-201ENST00000407532 367 ntBASIC3.37□□□□□ -1.87
LMX1BO60663 RAB9AP3-201ENST00000412737 573 ntBASIC3.37□□□□□ -1.87
LMX1BO60663 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC3.37□□□□□ -1.87
LMX1BO60663 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC3.37□□□□□ -1.87
LMX1BO60663 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.37□□□□□ -1.87
LMX1BO60663 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC3.37□□□□□ -1.87
LMX1BO60663 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC3.37□□□□□ -1.87
LMX1BO60663 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC3.37□□□□□ -1.87
LMX1BO60663 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC3.37□□□□□ -1.87
LMX1BO60663 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC3.37□□□□□ -1.87
LMX1BO60663 RPL31P35-201ENST00000431058 377 ntBASIC3.37□□□□□ -1.87
LMX1BO60663 AC104850.1-201ENST00000435940 476 ntBASIC3.37□□□□□ -1.87
LMX1BO60663 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC3.37□□□□□ -1.87
LMX1BO60663 SNRPEP8-201ENST00000442866 260 ntBASIC3.37□□□□□ -1.87
LMX1BO60663 NOTCH2P1-201ENST00000443481 624 ntBASIC3.37□□□□□ -1.87
LMX1BO60663 AC112653.1-201ENST00000443851 386 ntBASIC3.37□□□□□ -1.87
LMX1BO60663 RAB9AP1-201ENST00000449393 573 ntBASIC3.37□□□□□ -1.87
LMX1BO60663 MTND2P24-201ENST00000453434 806 ntBASIC3.37□□□□□ -1.87
LMX1BO60663 MTCO3P20-201ENST00000454926 688 ntBASIC3.37□□□□□ -1.87
LMX1BO60663 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC3.37□□□□□ -1.87
LMX1BO60663 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC3.37□□□□□ -1.87
LMX1BO60663 AC093677.1-201ENST00000514414 678 ntBASIC3.37□□□□□ -1.87
LMX1BO60663 Y_RNA.672-201ENST00000516289 104 ntBASIC3.37□□□□□ -1.87
LMX1BO60663 SNORA20.3-201ENST00000516880 132 ntBASIC3.37□□□□□ -1.87
LMX1BO60663 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC3.37□□□□□ -1.87
LMX1BO60663 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.37□□□□□ -1.87
LMX1BO60663 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC3.37□□□□□ -1.87
LMX1BO60663 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC3.37□□□□□ -1.87
LMX1BO60663 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC3.37□□□□□ -1.87
LMX1BO60663 YPEL5P3-201ENST00000547227 352 ntBASIC3.37□□□□□ -1.87
LMX1BO60663 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC3.37□□□□□ -1.87
LMX1BO60663 AC034268.2-201ENST00000571784 482 ntBASIC3.37□□□□□ -1.87
LMX1BO60663 AC099489.2-201ENST00000574976 260 ntBASIC3.37□□□□□ -1.87
LMX1BO60663 MIR3118-1-201ENST00000581787 76 ntBASIC3.37□□□□□ -1.87
LMX1BO60663 NF1P5-201ENST00000588287 448 ntBASIC3.37□□□□□ -1.87
LMX1BO60663 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC3.37□□□□□ -1.87
LMX1BO60663 BBIP1P1-201ENST00000602999 279 ntBASIC3.37□□□□□ -1.87
LMX1BO60663 AC008277.2-201ENST00000605196 797 ntBASIC3.37□□□□□ -1.87
LMX1BO60663 RNU6-87P-201ENST00000607561 108 ntBASIC3.37□□□□□ -1.87
LMX1BO60663 AC019176.2-201ENST00000611579 315 ntBASIC3.37□□□□□ -1.87
LMX1BO60663 AL121772.2-201ENST00000614331 297 ntBASIC3.37□□□□□ -1.87
LMX1BO60663 MIR6864-201ENST00000617935 70 ntBASIC3.37□□□□□ -1.87
LMX1BO60663 AC009159.1-201ENST00000618386 642 ntBASIC3.37□□□□□ -1.87
LMX1BO60663 AC004009.2-201ENST00000623016 728 ntBASIC3.37□□□□□ -1.87
LMX1BO60663 AC005609.4-201ENST00000625071 447 ntBASIC3.37□□□□□ -1.87
LMX1BO60663 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.37□□□□□ -1.87
LMX1BO60663 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.37□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 91 ms