Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 VN1R83P-201ENST00000595685 445 ntBASIC3.12□□□□□ -1.91
CLDN3O15551 AC069304.2-201ENST00000605154 435 ntBASIC3.12□□□□□ -1.91
CLDN3O15551 AC011330.2-201ENST00000621680 635 ntBASIC3.12□□□□□ -1.91
CLDN3O15551 AC090772.4-201ENST00000623599 362 ntBASIC3.12□□□□□ -1.91
CLDN3O15551 AL138960.2-201ENST00000625145 535 ntBASIC3.12□□□□□ -1.91
CLDN3O15551 AC106858.1-201ENST00000637497 429 ntBASIC3.12□□□□□ -1.91
CLDN3O15551 AL365361.1-201ENST00000566942 3481 ntBASIC3.12□□□□□ -1.91
CLDN3O15551 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.12□□□□□ -1.91
CLDN3O15551 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.11□□□□□ -1.91
CLDN3O15551 API5P2-201ENST00000397055 1498 ntBASIC3.11□□□□□ -1.91
CLDN3O15551 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
CLDN3O15551 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
CLDN3O15551 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.11□□□□□ -1.91
CLDN3O15551 RNU1-35P-201ENST00000362782 153 ntBASIC3.11□□□□□ -1.91
CLDN3O15551 SNORA51.4-201ENST00000364993 124 ntBASIC3.11□□□□□ -1.91
CLDN3O15551 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC3.11□□□□□ -1.91
CLDN3O15551 Y_RNA.408-201ENST00000383987 102 ntBASIC3.11□□□□□ -1.91
CLDN3O15551 MIR23A-201ENST00000385245 73 ntBASIC3.11□□□□□ -1.91
CLDN3O15551 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
CLDN3O15551 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
CLDN3O15551 RPS3AP24-201ENST00000407896 734 ntBASIC3.11□□□□□ -1.91
CLDN3O15551 CCDC58P2-201ENST00000417131 366 ntBASIC3.11□□□□□ -1.91
CLDN3O15551 SDCBPP3-201ENST00000419629 891 ntBASIC3.11□□□□□ -1.91
CLDN3O15551 AL645937.1-202ENST00000421799 937 ntBASIC3.11□□□□□ -1.91
CLDN3O15551 MTCO2P5-201ENST00000422621 426 ntBASIC3.11□□□□□ -1.91
CLDN3O15551 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.11□□□□□ -1.91
CLDN3O15551 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
CLDN3O15551 AL831737.1-201ENST00000441288 271 ntBASIC3.11□□□□□ -1.91
CLDN3O15551 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC3.11□□□□□ -1.91
CLDN3O15551 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC3.11□□□□□ -1.91
CLDN3O15551 HIGD1AP13-201ENST00000509878 289 ntBASIC3.11□□□□□ -1.91
CLDN3O15551 AC109464.2-201ENST00000510242 943 ntBASIC3.11□□□□□ -1.91
CLDN3O15551 XKRY-201ENST00000510392 1100 ntBASIC3.11□□□□□ -1.91
CLDN3O15551 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC3.11□□□□□ -1.91
CLDN3O15551 RNA5SP367-201ENST00000516557 118 ntBASIC3.11□□□□□ -1.91
CLDN3O15551 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC3.11□□□□□ -1.91
CLDN3O15551 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC3.11□□□□□ -1.91
CLDN3O15551 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC3.11□□□□□ -1.91
CLDN3O15551 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC3.11□□□□□ -1.91
CLDN3O15551 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC3.11□□□□□ -1.91
CLDN3O15551 AC106782.4-201ENST00000568264 210 ntBASIC3.11□□□□□ -1.91
CLDN3O15551 AC034268.2-201ENST00000571784 482 ntBASIC3.11□□□□□ -1.91
CLDN3O15551 AC090615.1-201ENST00000577519 154 ntBASIC3.11□□□□□ -1.91
CLDN3O15551 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
CLDN3O15551 AC105224.1-201ENST00000587055 421 ntBASIC3.11□□□□□ -1.91
CLDN3O15551 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC3.11□□□□□ -1.91
CLDN3O15551 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC3.11□□□□□ -1.91
CLDN3O15551 VN1R92P-201ENST00000598511 928 ntBASIC3.11□□□□□ -1.91
CLDN3O15551 HSPE1P7-201ENST00000604681 321 ntBASIC3.11□□□□□ -1.91
CLDN3O15551 AL138880.2-201ENST00000616214 239 ntBASIC3.11□□□□□ -1.91
CLDN3O15551 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
CLDN3O15551 AP003122.6-201ENST00000623831 495 ntBASIC3.11□□□□□ -1.91
CLDN3O15551 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC3.11□□□□□ -1.91
CLDN3O15551 MAPK10-322ENST00000641485 4530 ntBASIC3.11□□□□□ -1.91
CLDN3O15551 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
CLDN3O15551 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
CLDN3O15551 SNORA80A-201ENST00000363922 136 ntBASIC3.1□□□□□ -1.91
CLDN3O15551 SNORA18.3-201ENST00000384122 132 ntBASIC3.1□□□□□ -1.91
CLDN3O15551 MIR512-1-201ENST00000384913 84 ntBASIC3.1□□□□□ -1.91
CLDN3O15551 RPL17P50-201ENST00000396131 546 ntBASIC3.1□□□□□ -1.91
CLDN3O15551 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.1□□□□□ -1.91
CLDN3O15551 AL590084.1-201ENST00000407885 387 ntBASIC3.1□□□□□ -1.91
CLDN3O15551 AC068533.2-201ENST00000411872 306 ntBASIC3.1□□□□□ -1.91
CLDN3O15551 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC3.1□□□□□ -1.91
CLDN3O15551 AL139421.1-201ENST00000423010 169 ntBASIC3.1□□□□□ -1.91
CLDN3O15551 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC3.1□□□□□ -1.91
CLDN3O15551 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC3.1□□□□□ -1.91
CLDN3O15551 AC093156.1-201ENST00000440382 670 ntBASIC3.1□□□□□ -1.91
CLDN3O15551 OFD1P7Y-201ENST00000454643 1155 ntBASIC3.1□□□□□ -1.91
CLDN3O15551 AC017037.2-201ENST00000513850 890 ntBASIC3.1□□□□□ -1.91
CLDN3O15551 AC022483.1-201ENST00000514020 567 ntBASIC3.1□□□□□ -1.91
CLDN3O15551 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC3.1□□□□□ -1.91
CLDN3O15551 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC3.1□□□□□ -1.91
CLDN3O15551 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC3.1□□□□□ -1.91
CLDN3O15551 DNAJC8P1-201ENST00000554535 372 ntBASIC3.1□□□□□ -1.91
CLDN3O15551 AL132657.2-201ENST00000564417 358 ntBASIC3.1□□□□□ -1.91
CLDN3O15551 MIR3921-201ENST00000577308 85 ntBASIC3.1□□□□□ -1.91
CLDN3O15551 VN1R78P-201ENST00000597393 564 ntBASIC3.1□□□□□ -1.91
CLDN3O15551 AL390208.1-201ENST00000605885 644 ntBASIC3.1□□□□□ -1.91
CLDN3O15551 PART1_2.1-201ENST00000612397 250 ntBASIC3.1□□□□□ -1.91
CLDN3O15551 AC104763.3-201ENST00000613765 618 ntBASIC3.1□□□□□ -1.91
CLDN3O15551 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.1□□□□□ -1.91
CLDN3O15551 MTND5P7-201ENST00000413558 1798 ntBASIC3.1□□□□□ -1.91
CLDN3O15551 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.1□□□□□ -1.91
CLDN3O15551 AC012321.1-201ENST00000561622 1588 ntBASIC3.09□□□□□ -1.91
CLDN3O15551 AC233263.6-201ENST00000631132 1963 ntBASIC3.09□□□□□ -1.91
CLDN3O15551 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
CLDN3O15551 RNU6-1027P-201ENST00000383998 107 ntBASIC3.09□□□□□ -1.91
CLDN3O15551 SNORD116-12-201ENST00000384468 92 ntBASIC3.09□□□□□ -1.91
CLDN3O15551 MIR181B1-201ENST00000385240 110 ntBASIC3.09□□□□□ -1.91
CLDN3O15551 RNU6-1197P-201ENST00000391183 107 ntBASIC3.09□□□□□ -1.91
CLDN3O15551 U3.26-201ENST00000391236 204 ntBASIC3.09□□□□□ -1.91
CLDN3O15551 MIR1290-201ENST00000408735 78 ntBASIC3.09□□□□□ -1.91
CLDN3O15551 NDUFB4P5-201ENST00000415445 361 ntBASIC3.09□□□□□ -1.91
CLDN3O15551 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.09□□□□□ -1.91
CLDN3O15551 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC3.09□□□□□ -1.91
CLDN3O15551 RPS24P13-201ENST00000442520 397 ntBASIC3.09□□□□□ -1.91
CLDN3O15551 AC025750.2-201ENST00000442609 450 ntBASIC3.09□□□□□ -1.91
CLDN3O15551 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC3.09□□□□□ -1.91
CLDN3O15551 SNRPGP6-201ENST00000451124 220 ntBASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 158.3 ms