Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC2.66□□□□□ -1.98
CCDC88BA6NC98 RN7SKP34-201ENST00000516142 244 ntBASIC2.66□□□□□ -1.98
CCDC88BA6NC98 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC2.66□□□□□ -1.98
CCDC88BA6NC98 SMARCE1P4-201ENST00000523647 241 ntBASIC2.66□□□□□ -1.98
CCDC88BA6NC98 MIR4716-201ENST00000579628 84 ntBASIC2.66□□□□□ -1.98
CCDC88BA6NC98 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC2.66□□□□□ -1.98
CCDC88BA6NC98 AC011978.2-201ENST00000569835 2054 ntBASIC2.66□□□□□ -1.98
CCDC88BA6NC98 AL590084.1-201ENST00000407885 387 ntBASIC2.65□□□□□ -1.98
CCDC88BA6NC98 SSXP9-201ENST00000417503 292 ntBASIC2.65□□□□□ -1.98
CCDC88BA6NC98 TRAPPC2P5-201ENST00000426293 308 ntBASIC2.65□□□□□ -1.98
CCDC88BA6NC98 AC009474.2-201ENST00000451383 136 ntBASIC2.65□□□□□ -1.98
CCDC88BA6NC98 AC104308.1-201ENST00000454621 333 ntBASIC2.65□□□□□ -1.98
CCDC88BA6NC98 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC2.65□□□□□ -1.98
CCDC88BA6NC98 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC2.65□□□□□ -1.98
CCDC88BA6NC98 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC2.65□□□□□ -1.98
CCDC88BA6NC98 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC2.65□□□□□ -1.98
CCDC88BA6NC98 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.65□□□□□ -1.98
CCDC88BA6NC98 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
CCDC88BA6NC98 MIR517C-201ENST00000385103 95 ntBASIC2.65□□□□□ -1.99
CCDC88BA6NC98 SNORA67.6-201ENST00000391093 99 ntBASIC2.65□□□□□ -1.99
CCDC88BA6NC98 AC108734.3-201ENST00000481241 1165 ntBASIC2.65□□□□□ -1.99
CCDC88BA6NC98 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC2.65□□□□□ -1.99
CCDC88BA6NC98 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC2.65□□□□□ -1.99
CCDC88BA6NC98 MTND5P35-201ENST00000557537 1720 ntBASIC2.65□□□□□ -1.99
CCDC88BA6NC98 AC098848.2-201ENST00000588023 330 ntBASIC2.65□□□□□ -1.99
CCDC88BA6NC98 AC233981.2-201ENST00000611524 1614 ntBASIC2.65□□□□□ -1.99
CCDC88BA6NC98 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC2.64□□□□□ -1.99
CCDC88BA6NC98 AC027514.1-201ENST00000588561 1603 ntBASIC2.64□□□□□ -1.99
CCDC88BA6NC98 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
CCDC88BA6NC98 RPS15AP7-201ENST00000439294 405 ntBASIC2.64□□□□□ -1.99
CCDC88BA6NC98 AL137159.1-201ENST00000452808 512 ntBASIC2.64□□□□□ -1.99
CCDC88BA6NC98 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC2.64□□□□□ -1.99
CCDC88BA6NC98 AC012181.1-201ENST00000479895 423 ntBASIC2.64□□□□□ -1.99
CCDC88BA6NC98 RPS29P20-201ENST00000489592 171 ntBASIC2.64□□□□□ -1.99
CCDC88BA6NC98 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC2.64□□□□□ -1.99
CCDC88BA6NC98 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.64□□□□□ -1.99
CCDC88BA6NC98 SNORA31.24-201ENST00000517232 57 ntBASIC2.64□□□□□ -1.99
CCDC88BA6NC98 AC239860.2-201ENST00000525886 270 ntBASIC2.64□□□□□ -1.99
CCDC88BA6NC98 SNORD39.2-201ENST00000579995 76 ntBASIC2.64□□□□□ -1.99
CCDC88BA6NC98 MIR6504-201ENST00000613520 61 ntBASIC2.64□□□□□ -1.99
CCDC88BA6NC98 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC2.64□□□□□ -1.99
CCDC88BA6NC98 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
CCDC88BA6NC98 Y_RNA.224-201ENST00000364308 111 ntBASIC2.63□□□□□ -1.99
CCDC88BA6NC98 RPL21P75-201ENST00000396599 483 ntBASIC2.63□□□□□ -1.99
CCDC88BA6NC98 AL035405.1-201ENST00000400795 710 ntBASIC2.63□□□□□ -1.99
CCDC88BA6NC98 RPL21P28-201ENST00000401418 483 ntBASIC2.63□□□□□ -1.99
CCDC88BA6NC98 AL592114.1-201ENST00000403842 483 ntBASIC2.63□□□□□ -1.99
CCDC88BA6NC98 AP000567.1-201ENST00000406413 156 ntBASIC2.63□□□□□ -1.99
CCDC88BA6NC98 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC2.63□□□□□ -1.99
CCDC88BA6NC98 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC2.63□□□□□ -1.99
CCDC88BA6NC98 CASP3P1-201ENST00000446037 609 ntBASIC2.63□□□□□ -1.99
CCDC88BA6NC98 MOB1AP2-201ENST00000446060 614 ntBASIC2.63□□□□□ -1.99
CCDC88BA6NC98 RNU1-123P-201ENST00000458950 160 ntBASIC2.63□□□□□ -1.99
CCDC88BA6NC98 TOMM22P6-201ENST00000465035 409 ntBASIC2.63□□□□□ -1.99
CCDC88BA6NC98 AC011979.1-201ENST00000472300 483 ntBASIC2.63□□□□□ -1.99
CCDC88BA6NC98 RPL21P93-201ENST00000480465 489 ntBASIC2.63□□□□□ -1.99
CCDC88BA6NC98 AC233702.1-201ENST00000482905 502 ntBASIC2.63□□□□□ -1.99
CCDC88BA6NC98 AC093591.1-201ENST00000491435 481 ntBASIC2.63□□□□□ -1.99
CCDC88BA6NC98 RPL21P16-201ENST00000495531 483 ntBASIC2.63□□□□□ -1.99
CCDC88BA6NC98 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC2.63□□□□□ -1.99
CCDC88BA6NC98 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC2.63□□□□□ -1.99
CCDC88BA6NC98 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC2.63□□□□□ -1.99
CCDC88BA6NC98 AC090425.2-201ENST00000608818 501 ntBASIC2.63□□□□□ -1.99
CCDC88BA6NC98 AC068944.2-201ENST00000610373 403 ntBASIC2.63□□□□□ -1.99
CCDC88BA6NC98 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC2.62□□□□□ -1.99
CCDC88BA6NC98 RPS15AP1-201ENST00000457423 391 ntBASIC2.62□□□□□ -1.99
CCDC88BA6NC98 AC080013.2-201ENST00000460866 323 ntBASIC2.62□□□□□ -1.99
CCDC88BA6NC98 HMGN1P8-201ENST00000463578 288 ntBASIC2.62□□□□□ -1.99
CCDC88BA6NC98 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC2.62□□□□□ -1.99
CCDC88BA6NC98 RNU6-56P-201ENST00000516986 93 ntBASIC2.62□□□□□ -1.99
CCDC88BA6NC98 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC2.62□□□□□ -1.99
CCDC88BA6NC98 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC2.62□□□□□ -1.99
CCDC88BA6NC98 SEPT7P9-203ENST00000604116 343 ntBASIC2.62□□□□□ -1.99
CCDC88BA6NC98 AC090617.7-201ENST00000623952 126 ntBASIC2.62□□□□□ -1.99
CCDC88BA6NC98 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC2.62□□□□□ -1.99
CCDC88BA6NC98 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC2.62□□□□□ -1.99
CCDC88BA6NC98 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC2.62□□□□□ -1.99
CCDC88BA6NC98 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC2.61□□□□□ -1.99
CCDC88BA6NC98 SNRPEP2-201ENST00000397592 279 ntBASIC2.61□□□□□ -1.99
CCDC88BA6NC98 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC2.61□□□□□ -1.99
CCDC88BA6NC98 MTCO3P44-201ENST00000510977 541 ntBASIC2.61□□□□□ -1.99
CCDC88BA6NC98 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC2.61□□□□□ -1.99
CCDC88BA6NC98 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC2.61□□□□□ -1.99
CCDC88BA6NC98 AC113368.1-201ENST00000603736 382 ntBASIC2.61□□□□□ -1.99
CCDC88BA6NC98 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC2.61□□□□□ -1.99
CCDC88BA6NC98 AL158801.5-201ENST00000623123 465 ntBASIC2.61□□□□□ -1.99
CCDC88BA6NC98 RNU6-707P-201ENST00000364647 95 ntBASIC2.6□□□□□ -1.99
CCDC88BA6NC98 RNU6-356P-201ENST00000384140 107 ntBASIC2.6□□□□□ -1.99
CCDC88BA6NC98 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC2.6□□□□□ -1.99
CCDC88BA6NC98 RPS29P29-201ENST00000456396 171 ntBASIC2.6□□□□□ -1.99
CCDC88BA6NC98 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC2.6□□□□□ -1.99
CCDC88BA6NC98 IGHVIII-38-1-201ENST00000521454 282 ntBASIC2.6□□□□□ -1.99
CCDC88BA6NC98 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC2.6□□□□□ -1.99
CCDC88BA6NC98 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC2.6□□□□□ -1.99
CCDC88BA6NC98 AC132825.8-201ENST00000640783 297 ntBASIC2.6□□□□□ -1.99
CCDC88BA6NC98 ZNF209P-201ENST00000593450 2304 ntBASIC2.6□□□□□ -1.99
CCDC88BA6NC98 TEX41-202ENST00000414256 604 ntTSL 5 BASIC2.59□□□□□ -1.99
CCDC88BA6NC98 AL354695.1-201ENST00000427935 228 ntBASIC2.59□□□□□ -1.99
CCDC88BA6NC98 HMGN2P20-201ENST00000437531 273 ntBASIC2.59□□□□□ -1.99
CCDC88BA6NC98 RPL23AP55-201ENST00000498163 452 ntBASIC2.59□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms