Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AC093677.1-201ENST00000514414 678 ntBASIC3.25□□□□□ -1.89
CCDC40Q4G0X9 AC008885.1-201ENST00000514930 301 ntBASIC3.25□□□□□ -1.89
CCDC40Q4G0X9 AP003730.2-201ENST00000526385 546 ntTSL 3 BASIC3.25□□□□□ -1.89
CCDC40Q4G0X9 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC3.25□□□□□ -1.89
CCDC40Q4G0X9 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC3.25□□□□□ -1.89
CCDC40Q4G0X9 AL157394.1-201ENST00000562983 1224 ntBASIC3.25□□□□□ -1.89
CCDC40Q4G0X9 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
CCDC40Q4G0X9 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.25□□□□□ -1.89
CCDC40Q4G0X9 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC3.25□□□□□ -1.89
CCDC40Q4G0X9 AC078899.3-201ENST00000599065 212 ntBASIC3.25□□□□□ -1.89
CCDC40Q4G0X9 BNIP3P26-201ENST00000600827 554 ntBASIC3.25□□□□□ -1.89
CCDC40Q4G0X9 SRGNP1-201ENST00000603392 451 ntBASIC3.25□□□□□ -1.89
CCDC40Q4G0X9 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC3.25□□□□□ -1.89
CCDC40Q4G0X9 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
CCDC40Q4G0X9 AL138880.2-201ENST00000616214 239 ntBASIC3.25□□□□□ -1.89
CCDC40Q4G0X9 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.25□□□□□ -1.89
CCDC40Q4G0X9 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
CCDC40Q4G0X9 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.25□□□□□ -1.89
CCDC40Q4G0X9 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
CCDC40Q4G0X9 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
CCDC40Q4G0X9 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.24□□□□□ -1.89
CCDC40Q4G0X9 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
CCDC40Q4G0X9 AC092435.3-201ENST00000565538 3654 ntBASIC3.24□□□□□ -1.89
CCDC40Q4G0X9 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
CCDC40Q4G0X9 RNU6-799P-201ENST00000363567 107 ntBASIC3.24□□□□□ -1.89
CCDC40Q4G0X9 RNU6-560P-201ENST00000364007 108 ntBASIC3.24□□□□□ -1.89
CCDC40Q4G0X9 RNU6-1027P-201ENST00000383998 107 ntBASIC3.24□□□□□ -1.89
CCDC40Q4G0X9 RNU6-413P-201ENST00000384115 107 ntBASIC3.24□□□□□ -1.89
CCDC40Q4G0X9 AL031679.1-201ENST00000400616 525 ntBASIC3.24□□□□□ -1.89
CCDC40Q4G0X9 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC3.24□□□□□ -1.89
CCDC40Q4G0X9 TPMTP2-201ENST00000414372 726 ntBASIC3.24□□□□□ -1.89
CCDC40Q4G0X9 MTCO2P5-201ENST00000422621 426 ntBASIC3.24□□□□□ -1.89
CCDC40Q4G0X9 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC3.24□□□□□ -1.89
CCDC40Q4G0X9 SDCBPP1-201ENST00000440192 890 ntBASIC3.24□□□□□ -1.89
CCDC40Q4G0X9 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.24□□□□□ -1.89
CCDC40Q4G0X9 ZNF736P1Y-201ENST00000440402 1276 ntBASIC3.24□□□□□ -1.89
CCDC40Q4G0X9 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.24□□□□□ -1.89
CCDC40Q4G0X9 snoU109.3-201ENST00000459477 145 ntBASIC3.24□□□□□ -1.89
CCDC40Q4G0X9 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC3.24□□□□□ -1.89
CCDC40Q4G0X9 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.24□□□□□ -1.89
CCDC40Q4G0X9 AC017037.2-201ENST00000513850 890 ntBASIC3.24□□□□□ -1.89
CCDC40Q4G0X9 AC009812.2-201ENST00000517657 457 ntBASIC3.24□□□□□ -1.89
CCDC40Q4G0X9 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.24□□□□□ -1.89
CCDC40Q4G0X9 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC3.24□□□□□ -1.89
CCDC40Q4G0X9 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
CCDC40Q4G0X9 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.24□□□□□ -1.89
CCDC40Q4G0X9 MIR3944-201ENST00000581277 108 ntBASIC3.24□□□□□ -1.89
CCDC40Q4G0X9 AL031985.2-201ENST00000600955 480 ntBASIC3.24□□□□□ -1.89
CCDC40Q4G0X9 MIR6733-201ENST00000635723 61 ntBASIC3.24□□□□□ -1.89
CCDC40Q4G0X9 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
CCDC40Q4G0X9 MTND5P1-201ENST00000445440 1375 ntBASIC3.24□□□□□ -1.89
CCDC40Q4G0X9 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC3.24□□□□□ -1.89
CCDC40Q4G0X9 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.23□□□□□ -1.89
CCDC40Q4G0X9 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.23□□□□□ -1.89
CCDC40Q4G0X9 FRG1BP-201ENST00000278882 761 ntBASIC3.23□□□□□ -1.89
CCDC40Q4G0X9 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
CCDC40Q4G0X9 SNORD46.1-201ENST00000364139 104 ntBASIC3.23□□□□□ -1.89
CCDC40Q4G0X9 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC3.23□□□□□ -1.89
CCDC40Q4G0X9 RNA5SP252-201ENST00000391131 119 ntBASIC3.23□□□□□ -1.89
CCDC40Q4G0X9 SNORA26.7-201ENST00000391288 122 ntBASIC3.23□□□□□ -1.89
CCDC40Q4G0X9 RN7SKP220-201ENST00000410611 288 ntBASIC3.23□□□□□ -1.89
CCDC40Q4G0X9 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC3.23□□□□□ -1.89
CCDC40Q4G0X9 AL139421.1-201ENST00000423010 169 ntBASIC3.23□□□□□ -1.89
CCDC40Q4G0X9 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC3.23□□□□□ -1.89
CCDC40Q4G0X9 AC104332.2-201ENST00000429959 156 ntBASIC3.23□□□□□ -1.89
CCDC40Q4G0X9 AL121871.1-201ENST00000443413 436 ntBASIC3.23□□□□□ -1.89
CCDC40Q4G0X9 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC3.23□□□□□ -1.89
CCDC40Q4G0X9 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC3.23□□□□□ -1.89
CCDC40Q4G0X9 AC007327.1-201ENST00000447461 264 ntBASIC3.23□□□□□ -1.89
CCDC40Q4G0X9 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.23□□□□□ -1.89
CCDC40Q4G0X9 OR2A20P-203ENST00000498397 1268 ntBASIC3.23□□□□□ -1.89
CCDC40Q4G0X9 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.23□□□□□ -1.89
CCDC40Q4G0X9 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC3.23□□□□□ -1.89
CCDC40Q4G0X9 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.23□□□□□ -1.89
CCDC40Q4G0X9 RNU6-56P-201ENST00000516986 93 ntBASIC3.23□□□□□ -1.89
CCDC40Q4G0X9 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC3.23□□□□□ -1.89
CCDC40Q4G0X9 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC3.23□□□□□ -1.89
CCDC40Q4G0X9 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC3.23□□□□□ -1.89
CCDC40Q4G0X9 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.23□□□□□ -1.89
CCDC40Q4G0X9 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC3.23□□□□□ -1.89
CCDC40Q4G0X9 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC3.23□□□□□ -1.89
CCDC40Q4G0X9 AC010653.1-201ENST00000571108 881 ntBASIC3.23□□□□□ -1.89
CCDC40Q4G0X9 AC083760.1-201ENST00000589621 670 ntBASIC3.23□□□□□ -1.89
CCDC40Q4G0X9 AC015871.2-201ENST00000603605 948 ntBASIC3.23□□□□□ -1.89
CCDC40Q4G0X9 AP002826.1-201ENST00000608835 315 ntBASIC3.23□□□□□ -1.89
CCDC40Q4G0X9 AL109620.1-201ENST00000618738 1197 ntBASIC3.23□□□□□ -1.89
CCDC40Q4G0X9 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
CCDC40Q4G0X9 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC3.23□□□□□ -1.89
CCDC40Q4G0X9 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC3.23□□□□□ -1.89
CCDC40Q4G0X9 AC009039.2-201ENST00000624524 529 ntBASIC3.23□□□□□ -1.89
CCDC40Q4G0X9 AL445984.1-201ENST00000637834 659 ntBASIC3.23□□□□□ -1.89
CCDC40Q4G0X9 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.23□□□□□ -1.89
CCDC40Q4G0X9 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
CCDC40Q4G0X9 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CCDC40Q4G0X9 AL079343.1-201ENST00000572358 1771 ntBASIC3.23□□□□□ -1.89
CCDC40Q4G0X9 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC40Q4G0X9 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC3.22□□□□□ -1.89
CCDC40Q4G0X9 AL022578.1-201ENST00000439330 1433 ntBASIC3.22□□□□□ -1.89
CCDC40Q4G0X9 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
CCDC40Q4G0X9 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 92.2 ms