Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 AC005951.2-201ENST00000576282 495 ntBASIC3.34□□□□□ -1.87
CHMP1AQ9HD42 AC009977.1-201ENST00000586015 570 ntBASIC3.34□□□□□ -1.87
CHMP1AQ9HD42 AC006116.10-201ENST00000591836 581 ntBASIC3.34□□□□□ -1.87
CHMP1AQ9HD42 AC119751.7-201ENST00000600494 245 ntBASIC3.34□□□□□ -1.87
CHMP1AQ9HD42 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC3.34□□□□□ -1.87
CHMP1AQ9HD42 ARF4P1-201ENST00000605447 541 ntBASIC3.34□□□□□ -1.87
CHMP1AQ9HD42 AC245517.5-201ENST00000611529 162 ntBASIC3.34□□□□□ -1.87
CHMP1AQ9HD42 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC3.34□□□□□ -1.87
CHMP1AQ9HD42 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.34□□□□□ -1.87
CHMP1AQ9HD42 MIR7703-201ENST00000620784 77 ntBASIC3.34□□□□□ -1.87
CHMP1AQ9HD42 AC091953.2-201ENST00000623979 160 ntBASIC3.34□□□□□ -1.87
CHMP1AQ9HD42 AC010149.2-201ENST00000637608 315 ntBASIC3.34□□□□□ -1.87
CHMP1AQ9HD42 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.34□□□□□ -1.87
CHMP1AQ9HD42 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.34□□□□□ -1.88
CHMP1AQ9HD42 AC012618.3-205ENST00000637896 1496 ntBASIC3.34□□□□□ -1.88
CHMP1AQ9HD42 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.34□□□□□ -1.88
CHMP1AQ9HD42 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.34□□□□□ -1.88
CHMP1AQ9HD42 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
CHMP1AQ9HD42 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 RNU5A-1-201ENST00000362698 116 ntBASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 RNU6-223P-201ENST00000362830 107 ntBASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 SNORA58B-201ENST00000364259 136 ntBASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 RPS4XP9-201ENST00000405151 780 ntBASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 HSPE1P8-201ENST00000406997 288 ntBASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 RPL37P18-201ENST00000411602 243 ntBASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 ELOCP19-201ENST00000411919 318 ntBASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 AL365338.1-201ENST00000422282 858 ntBASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 PGBD4P3-201ENST00000440731 581 ntBASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 AL022238.1-201ENST00000442557 355 ntBASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 AL360221.1-201ENST00000445989 335 ntBASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 RPS23P1-201ENST00000491662 432 ntBASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 PHBP14-201ENST00000512887 367 ntBASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 HMGN1P28-201ENST00000521340 364 ntBASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 FAM60DP-201ENST00000524174 632 ntBASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 HMGN1P30-201ENST00000589286 268 ntBASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 AL356218.2-201ENST00000605264 187 ntBASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 BX664608.1-201ENST00000610519 487 ntBASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 AC099778.2-201ENST00000610904 211 ntBASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 AC009090.3-201ENST00000616553 565 ntBASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 AC048344.4-201ENST00000619744 527 ntBASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 AL136313.1-201ENST00000624804 202 ntBASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 SNORA50A-202ENST00000629536 136 ntBASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 AC118273.1-201ENST00000525324 3006 ntBASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 LARP1BP1-201ENST00000506036 1359 ntBASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 AL079305.1-201ENST00000623159 3008 ntBASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
CHMP1AQ9HD42 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 RNU6-297P-201ENST00000384636 107 ntBASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 AP000567.1-201ENST00000406413 156 ntBASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 RN7SKP159-201ENST00000410657 292 ntBASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 HMGN1P14-201ENST00000412459 517 ntBASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 RPL21P32-201ENST00000419877 477 ntBASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 AC018630.2-202ENST00000422992 927 ntBASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 DNAJC19P7-201ENST00000428811 344 ntBASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 AC005094.1-201ENST00000440420 368 ntBASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 USP9YP29-201ENST00000445112 563 ntBASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 FTH1P21-201ENST00000512179 511 ntBASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 RNU1-61P-201ENST00000516107 151 ntBASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 RNU6-64P-201ENST00000517119 105 ntBASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 PAICSP4-201ENST00000517543 1253 ntBASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 AP003467.2-201ENST00000520175 319 ntBASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.32□□□□□ -1.88
CHMP1AQ9HD42 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 116.6 ms