Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC4.56□□□□□ -1.68
NUP88Q99567 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.56□□□□□ -1.68
NUP88Q99567 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
NUP88Q99567 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
NUP88Q99567 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
NUP88Q99567 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.55□□□□□ -1.68
NUP88Q99567 Y_RNA.296-201ENST00000364930 108 ntBASIC4.55□□□□□ -1.68
NUP88Q99567 RNU6-1074P-201ENST00000383995 104 ntBASIC4.55□□□□□ -1.68
NUP88Q99567 RNU6-637P-201ENST00000384050 107 ntBASIC4.55□□□□□ -1.68
NUP88Q99567 RPA3-203ENST00000401447 414 ntTSL 3 BASIC4.55□□□□□ -1.68
NUP88Q99567 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC4.55□□□□□ -1.68
NUP88Q99567 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC4.55□□□□□ -1.68
NUP88Q99567 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC4.55□□□□□ -1.68
NUP88Q99567 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC4.55□□□□□ -1.68
NUP88Q99567 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC4.55□□□□□ -1.68
NUP88Q99567 Z74696.2-201ENST00000436514 498 ntBASIC4.55□□□□□ -1.68
NUP88Q99567 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC4.55□□□□□ -1.68
NUP88Q99567 VN1R34P-201ENST00000447387 883 ntBASIC4.55□□□□□ -1.68
NUP88Q99567 NANOGNBP1-201ENST00000448444 480 ntBASIC4.55□□□□□ -1.68
NUP88Q99567 NANOGP10-201ENST00000453325 895 ntBASIC4.55□□□□□ -1.68
NUP88Q99567 AC007967.1-201ENST00000455422 1159 ntBASIC4.55□□□□□ -1.68
NUP88Q99567 HMGB3P30-201ENST00000457863 606 ntBASIC4.55□□□□□ -1.68
NUP88Q99567 S100A11P1-201ENST00000477525 312 ntBASIC4.55□□□□□ -1.68
NUP88Q99567 RPS3AP50-201ENST00000487064 803 ntBASIC4.55□□□□□ -1.68
NUP88Q99567 AC010587.1-201ENST00000505809 469 ntBASIC4.55□□□□□ -1.68
NUP88Q99567 Vault.1-201ENST00000516474 102 ntBASIC4.55□□□□□ -1.68
NUP88Q99567 IGKV2-38-201ENST00000517443 247 ntBASIC4.55□□□□□ -1.68
NUP88Q99567 AC007991.1-201ENST00000522680 631 ntBASIC4.55□□□□□ -1.68
NUP88Q99567 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
NUP88Q99567 CYCSP30-201ENST00000546447 172 ntBASIC4.55□□□□□ -1.68
NUP88Q99567 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC4.55□□□□□ -1.68
NUP88Q99567 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC4.55□□□□□ -1.68
NUP88Q99567 MIR3146-201ENST00000580367 79 ntBASIC4.55□□□□□ -1.68
NUP88Q99567 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC4.55□□□□□ -1.68
NUP88Q99567 AP001429.1-201ENST00000602568 530 ntBASIC4.55□□□□□ -1.68
NUP88Q99567 AL161729.4-201ENST00000604650 476 ntBASIC4.55□□□□□ -1.68
NUP88Q99567 AC244258.1-201ENST00000637553 1071 ntBASIC4.55□□□□□ -1.68
NUP88Q99567 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC4.55□□□□□ -1.68
NUP88Q99567 AC018555.1-201ENST00000567548 1980 ntBASIC4.54□□□□□ -1.68
NUP88Q99567 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC4.54□□□□□ -1.68
NUP88Q99567 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC4.54□□□□□ -1.68
NUP88Q99567 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
NUP88Q99567 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
NUP88Q99567 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
NUP88Q99567 RNU6-1155P-201ENST00000363554 107 ntBASIC4.54□□□□□ -1.68
NUP88Q99567 RNU5A-8P-201ENST00000364102 114 ntBASIC4.54□□□□□ -1.68
NUP88Q99567 U1.1-201ENST00000384101 164 ntBASIC4.54□□□□□ -1.68
NUP88Q99567 MIR19A-201ENST00000384878 82 ntBASIC4.54□□□□□ -1.68
NUP88Q99567 SSXP9-201ENST00000417503 292 ntBASIC4.54□□□□□ -1.68
NUP88Q99567 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC4.54□□□□□ -1.68
NUP88Q99567 AL358934.1-201ENST00000432346 324 ntBASIC4.54□□□□□ -1.68
NUP88Q99567 AC009961.2-201ENST00000435771 251 ntBASIC4.54□□□□□ -1.68
NUP88Q99567 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC4.54□□□□□ -1.68
NUP88Q99567 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
NUP88Q99567 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC4.54□□□□□ -1.68
NUP88Q99567 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC4.54□□□□□ -1.68
NUP88Q99567 AC108059.3-201ENST00000456388 214 ntBASIC4.54□□□□□ -1.68
NUP88Q99567 AC107401.1-201ENST00000503426 685 ntBASIC4.54□□□□□ -1.68
NUP88Q99567 MTND2P33-201ENST00000506452 1031 ntBASIC4.54□□□□□ -1.68
NUP88Q99567 AC107934.1-201ENST00000522215 217 ntBASIC4.54□□□□□ -1.68
NUP88Q99567 ARL1-211ENST00000551828 776 ntTSL 5 BASIC4.54□□□□□ -1.68
NUP88Q99567 OR4T1P-201ENST00000554933 911 ntBASIC4.54□□□□□ -1.68
NUP88Q99567 AL391840.1-201ENST00000571144 367 ntBASIC4.54□□□□□ -1.68
NUP88Q99567 MIR3118-1-201ENST00000581787 76 ntBASIC4.54□□□□□ -1.68
NUP88Q99567 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC4.54□□□□□ -1.68
NUP88Q99567 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC4.54□□□□□ -1.68
NUP88Q99567 AC104662.1-201ENST00000604448 511 ntBASIC4.54□□□□□ -1.68
NUP88Q99567 AC004492.1-201ENST00000607036 742 ntBASIC4.54□□□□□ -1.68
NUP88Q99567 AC091304.9-201ENST00000612091 226 ntBASIC4.54□□□□□ -1.68
NUP88Q99567 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
NUP88Q99567 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC4.54□□□□□ -1.68
NUP88Q99567 OR5AK4P-201ENST00000635912 903 ntBASIC4.54□□□□□ -1.68
NUP88Q99567 AL773545.4-201ENST00000637262 310 ntBASIC4.54□□□□□ -1.68
NUP88Q99567 AL513478.4-201ENST00000641636 310 ntBASIC4.54□□□□□ -1.68
NUP88Q99567 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.54□□□□□ -1.68
NUP88Q99567 AL365440.1-201ENST00000436135 2167 ntBASIC4.54□□□□□ -1.68
NUP88Q99567 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.54□□□□□ -1.68
NUP88Q99567 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.53□□□□□ -1.68
NUP88Q99567 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
NUP88Q99567 ZNF285B-201ENST00000561698 1767 ntBASIC4.53□□□□□ -1.68
NUP88Q99567 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC4.53□□□□□ -1.68
NUP88Q99567 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
NUP88Q99567 Y_RNA.41-201ENST00000362646 102 ntBASIC4.53□□□□□ -1.68
NUP88Q99567 RNA5SP97-201ENST00000365006 84 ntBASIC4.53□□□□□ -1.68
NUP88Q99567 MIR135A2-201ENST00000384854 100 ntBASIC4.53□□□□□ -1.68
NUP88Q99567 Y_RNA.599-201ENST00000410489 109 ntBASIC4.53□□□□□ -1.68
NUP88Q99567 SNORA57.3-201ENST00000411095 141 ntBASIC4.53□□□□□ -1.68
NUP88Q99567 MTND1P21-201ENST00000412991 285 ntBASIC4.53□□□□□ -1.68
NUP88Q99567 RPL7AP73-201ENST00000413490 353 ntBASIC4.53□□□□□ -1.68
NUP88Q99567 ELOCP17-201ENST00000414751 326 ntBASIC4.53□□□□□ -1.68
NUP88Q99567 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC4.53□□□□□ -1.68
NUP88Q99567 AC099677.1-201ENST00000420575 175 ntBASIC4.53□□□□□ -1.68
NUP88Q99567 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC4.53□□□□□ -1.68
NUP88Q99567 AL139247.1-201ENST00000422768 325 ntBASIC4.53□□□□□ -1.68
NUP88Q99567 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC4.53□□□□□ -1.68
NUP88Q99567 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC4.53□□□□□ -1.68
NUP88Q99567 RPL31P35-201ENST00000431058 377 ntBASIC4.53□□□□□ -1.68
NUP88Q99567 RPL35AP22-201ENST00000436855 335 ntBASIC4.53□□□□□ -1.68
NUP88Q99567 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC4.53□□□□□ -1.68
NUP88Q99567 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC4.53□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 193.1 ms