Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 Y_RNA.338-201ENST00000365320 114 ntBASIC1.91□□□□□ -2.1
CHD3Q12873 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC1.91□□□□□ -2.1
CHD3Q12873 RNU1-138P-201ENST00000384093 164 ntBASIC1.91□□□□□ -2.1
CHD3Q12873 RNU4-52P-201ENST00000384209 138 ntBASIC1.91□□□□□ -2.1
CHD3Q12873 SNORA64-201ENST00000384674 134 ntBASIC1.91□□□□□ -2.1
CHD3Q12873 MIR142-201ENST00000384835 87 ntBASIC1.91□□□□□ -2.1
CHD3Q12873 MIR627-201ENST00000384979 97 ntBASIC1.91□□□□□ -2.1
CHD3Q12873 NRG4-201ENST00000394907 1159 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
CHD3Q12873 AL591034.1-201ENST00000407447 340 ntBASIC1.91□□□□□ -2.1
CHD3Q12873 RPL23AP39-201ENST00000415533 405 ntBASIC1.91□□□□□ -2.1
CHD3Q12873 C1DP3-201ENST00000455013 423 ntBASIC1.91□□□□□ -2.1
CHD3Q12873 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC1.91□□□□□ -2.1
CHD3Q12873 AC021146.7-201ENST00000509604 775 ntBASIC1.91□□□□□ -2.1
CHD3Q12873 MTCO1P47-201ENST00000523889 1271 ntBASIC1.91□□□□□ -2.1
CHD3Q12873 EIF4EP5-201ENST00000528228 640 ntBASIC1.91□□□□□ -2.1
CHD3Q12873 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC1.91□□□□□ -2.1
CHD3Q12873 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC1.91□□□□□ -2.1
CHD3Q12873 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC1.91□□□□□ -2.1
CHD3Q12873 VN1R74P-201ENST00000613259 503 ntBASIC1.91□□□□□ -2.1
CHD3Q12873 AC140725.3-201ENST00000616193 880 ntBASIC1.91□□□□□ -2.1
CHD3Q12873 MIR219B-201ENST00000637023 88 ntBASIC1.91□□□□□ -2.1
CHD3Q12873 FAM157B-203ENST00000639350 358 ntBASIC1.91□□□□□ -2.1
CHD3Q12873 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.91□□□□□ -2.1
CHD3Q12873 ZNF720P1-201ENST00000562403 1939 ntBASIC1.91□□□□□ -2.1
CHD3Q12873 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
CHD3Q12873 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
CHD3Q12873 Y_RNA.269-201ENST00000364685 89 ntBASIC1.91□□□□□ -2.1
CHD3Q12873 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC1.91□□□□□ -2.1
CHD3Q12873 RNU6-629P-201ENST00000384061 103 ntBASIC1.91□□□□□ -2.1
CHD3Q12873 LINC00434-201ENST00000423739 419 ntTSL 3 BASIC1.91□□□□□ -2.1
CHD3Q12873 AC023512.1-201ENST00000444513 499 ntBASIC1.91□□□□□ -2.1
CHD3Q12873 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC1.91□□□□□ -2.1
CHD3Q12873 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC1.91□□□□□ -2.1
CHD3Q12873 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.91□□□□□ -2.1
CHD3Q12873 AC104115.2-201ENST00000523026 687 ntBASIC1.91□□□□□ -2.1
CHD3Q12873 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
CHD3Q12873 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC1.91□□□□□ -2.1
CHD3Q12873 AC023043.2-201ENST00000589678 1026 ntBASIC1.91□□□□□ -2.1
CHD3Q12873 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC1.91□□□□□ -2.1
CHD3Q12873 AL391834.1-201ENST00000609609 560 ntBASIC1.91□□□□□ -2.1
CHD3Q12873 MIR6845-201ENST00000613182 61 ntBASIC1.91□□□□□ -2.1
CHD3Q12873 AC090897.3-201ENST00000636973 1157 ntBASIC1.91□□□□□ -2.1
CHD3Q12873 AC244517.1-201ENST00000606030 2086 ntBASIC1.91□□□□□ -2.1
CHD3Q12873 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
CHD3Q12873 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC1.91□□□□□ -2.1
CHD3Q12873 RNA5SP88-201ENST00000365560 109 ntBASIC1.9□□□□□ -2.11
CHD3Q12873 SNORD21-201ENST00000383953 95 ntBASIC1.9□□□□□ -2.11
CHD3Q12873 SPA17P1-201ENST00000416656 452 ntBASIC1.9□□□□□ -2.11
CHD3Q12873 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC1.9□□□□□ -2.11
CHD3Q12873 AL139109.1-201ENST00000455491 297 ntBASIC1.9□□□□□ -2.11
CHD3Q12873 AL024509.2-201ENST00000493462 493 ntBASIC1.9□□□□□ -2.11
CHD3Q12873 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC1.9□□□□□ -2.11
CHD3Q12873 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC1.9□□□□□ -2.11
CHD3Q12873 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC1.9□□□□□ -2.11
CHD3Q12873 TTC39CP1-201ENST00000512513 755 ntBASIC1.9□□□□□ -2.11
CHD3Q12873 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC1.9□□□□□ -2.11
CHD3Q12873 AC008083.2-201ENST00000546707 476 ntBASIC1.9□□□□□ -2.11
CHD3Q12873 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC1.9□□□□□ -2.11
CHD3Q12873 AC107954.1-201ENST00000565906 727 ntBASIC1.9□□□□□ -2.11
CHD3Q12873 AC090616.5-202ENST00000582111 297 ntBASIC1.9□□□□□ -2.11
CHD3Q12873 AC090525.3-201ENST00000605601 189 ntBASIC1.9□□□□□ -2.11
CHD3Q12873 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC1.9□□□□□ -2.11
CHD3Q12873 AP001521.1-201ENST00000609150 300 ntBASIC1.9□□□□□ -2.11
CHD3Q12873 AL161734.1-201ENST00000609720 557 ntBASIC1.9□□□□□ -2.11
CHD3Q12873 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC1.9□□□□□ -2.11
CHD3Q12873 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
CHD3Q12873 AC008432.1-201ENST00000615912 1320 ntBASIC1.9□□□□□ -2.11
CHD3Q12873 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
CHD3Q12873 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
CHD3Q12873 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC1.9□□□□□ -2.11
CHD3Q12873 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC1.9□□□□□ -2.11
CHD3Q12873 RNU4-31P-201ENST00000384211 141 ntBASIC1.9□□□□□ -2.11
CHD3Q12873 AC233728.2-201ENST00000425348 757 ntBASIC1.9□□□□□ -2.11
CHD3Q12873 AC011816.1-201ENST00000441346 546 ntBASIC1.9□□□□□ -2.11
CHD3Q12873 HMGB1P48-201ENST00000446155 598 ntBASIC1.9□□□□□ -2.11
CHD3Q12873 AL109741.2-201ENST00000455561 343 ntBASIC1.9□□□□□ -2.11
CHD3Q12873 NFU1-207ENST00000462320 558 ntTSL 4 BASIC1.9□□□□□ -2.11
CHD3Q12873 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC1.9□□□□□ -2.11
CHD3Q12873 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC1.9□□□□□ -2.11
CHD3Q12873 AC022690.1-201ENST00000526681 550 ntBASIC1.9□□□□□ -2.11
CHD3Q12873 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC1.9□□□□□ -2.11
CHD3Q12873 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC1.9□□□□□ -2.11
CHD3Q12873 AC060766.3-201ENST00000591442 263 ntBASIC1.9□□□□□ -2.11
CHD3Q12873 MTCO2P22-201ENST00000603246 681 ntBASIC1.9□□□□□ -2.11
CHD3Q12873 AC005021.1-201ENST00000608730 355 ntBASIC1.9□□□□□ -2.11
CHD3Q12873 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.9□□□□□ -2.11
CHD3Q12873 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC1.89□□□□□ -2.11
CHD3Q12873 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
CHD3Q12873 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
CHD3Q12873 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC1.89□□□□□ -2.11
CHD3Q12873 RNU1-17P-201ENST00000363022 152 ntBASIC1.89□□□□□ -2.11
CHD3Q12873 RNA5SP456-201ENST00000364002 114 ntBASIC1.89□□□□□ -2.11
CHD3Q12873 RNU6-31P-201ENST00000384388 108 ntBASIC1.89□□□□□ -2.11
CHD3Q12873 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC1.89□□□□□ -2.11
CHD3Q12873 USP9YP8-201ENST00000441913 500 ntBASIC1.89□□□□□ -2.11
CHD3Q12873 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC1.89□□□□□ -2.11
CHD3Q12873 FAM92A1P2-202ENST00000504766 877 ntBASIC1.89□□□□□ -2.11
CHD3Q12873 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC1.89□□□□□ -2.11
CHD3Q12873 AC108157.1-201ENST00000510511 539 ntBASIC1.89□□□□□ -2.11
CHD3Q12873 AC067904.2-201ENST00000517322 1283 ntBASIC1.89□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 98.2 ms