Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 SNORA31-201ENST00000362607 130 ntBASIC2.44□□□□□ -2.02
USP54Q70EL1 MIR499A-201ENST00000384903 122 ntBASIC2.44□□□□□ -2.02
USP54Q70EL1 RNU6-233P-201ENST00000410845 141 ntBASIC2.44□□□□□ -2.02
USP54Q70EL1 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC2.44□□□□□ -2.02
USP54Q70EL1 AL138799.3-201ENST00000438968 350 ntBASIC2.44□□□□□ -2.02
USP54Q70EL1 AL021397.1-201ENST00000451806 248 ntBASIC2.44□□□□□ -2.02
USP54Q70EL1 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC2.44□□□□□ -2.02
USP54Q70EL1 AC073901.1-201ENST00000462471 408 ntBASIC2.44□□□□□ -2.02
USP54Q70EL1 LARP7P4-201ENST00000481075 878 ntBASIC2.44□□□□□ -2.02
USP54Q70EL1 MTND4LP22-201ENST00000508209 276 ntBASIC2.44□□□□□ -2.02
USP54Q70EL1 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC2.44□□□□□ -2.02
USP54Q70EL1 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC2.44□□□□□ -2.02
USP54Q70EL1 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC2.44□□□□□ -2.02
USP54Q70EL1 AC092954.1-201ENST00000609121 445 ntBASIC2.44□□□□□ -2.02
USP54Q70EL1 AL589935.2-201ENST00000616471 1231 ntBASIC2.44□□□□□ -2.02
USP54Q70EL1 AC091046.2-201ENST00000620775 665 ntBASIC2.44□□□□□ -2.02
USP54Q70EL1 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC2.44□□□□□ -2.02
USP54Q70EL1 RNA5SP189-201ENST00000364920 115 ntBASIC2.44□□□□□ -2.02
USP54Q70EL1 SNORA25.9-201ENST00000365087 128 ntBASIC2.44□□□□□ -2.02
USP54Q70EL1 RNU6-532P-201ENST00000384318 107 ntBASIC2.44□□□□□ -2.02
USP54Q70EL1 AL021407.1-201ENST00000404531 386 ntBASIC2.44□□□□□ -2.02
USP54Q70EL1 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
USP54Q70EL1 USP9YP27-201ENST00000418455 438 ntBASIC2.44□□□□□ -2.02
USP54Q70EL1 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC2.44□□□□□ -2.02
USP54Q70EL1 AC093716.1-201ENST00000435923 377 ntBASIC2.44□□□□□ -2.02
USP54Q70EL1 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC2.44□□□□□ -2.02
USP54Q70EL1 AC090543.1-201ENST00000492168 485 ntBASIC2.44□□□□□ -2.02
USP54Q70EL1 AC005912.1-201ENST00000495392 255 ntBASIC2.44□□□□□ -2.02
USP54Q70EL1 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC2.44□□□□□ -2.02
USP54Q70EL1 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC2.44□□□□□ -2.02
USP54Q70EL1 REXO2-218ENST00000544827 880 ntTSL 3 BASIC2.44□□□□□ -2.02
USP54Q70EL1 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC2.44□□□□□ -2.02
USP54Q70EL1 AC002984.1-201ENST00000591692 448 ntBASIC2.44□□□□□ -2.02
USP54Q70EL1 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
USP54Q70EL1 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC2.44□□□□□ -2.02
USP54Q70EL1 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
USP54Q70EL1 EIF1AXP1-201ENST00000419267 435 ntBASIC2.43□□□□□ -2.02
USP54Q70EL1 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC2.43□□□□□ -2.02
USP54Q70EL1 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC2.43□□□□□ -2.02
USP54Q70EL1 SNRPGP9-201ENST00000456025 225 ntBASIC2.43□□□□□ -2.02
USP54Q70EL1 AC109486.1-201ENST00000486833 374 ntBASIC2.43□□□□□ -2.02
USP54Q70EL1 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC2.43□□□□□ -2.02
USP54Q70EL1 AC011352.3-201ENST00000505162 593 ntBASIC2.43□□□□□ -2.02
USP54Q70EL1 OR5H4P-201ENST00000510851 923 ntBASIC2.43□□□□□ -2.02
USP54Q70EL1 RNU6ATAC12P-201ENST00000516542 115 ntBASIC2.43□□□□□ -2.02
USP54Q70EL1 LINC02463-201ENST00000546414 497 ntTSL 3 BASIC2.43□□□□□ -2.02
USP54Q70EL1 PRELID2P1-201ENST00000552837 301 ntBASIC2.43□□□□□ -2.02
USP54Q70EL1 ISCA1P3-201ENST00000577104 373 ntBASIC2.43□□□□□ -2.02
USP54Q70EL1 AC124283.4-201ENST00000581815 456 ntBASIC2.43□□□□□ -2.02
USP54Q70EL1 AC105429.2-201ENST00000610567 517 ntBASIC2.43□□□□□ -2.02
USP54Q70EL1 AC010678.1-201ENST00000614118 713 ntBASIC2.43□□□□□ -2.02
USP54Q70EL1 AL589994.2-201ENST00000621124 579 ntBASIC2.43□□□□□ -2.02
USP54Q70EL1 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC2.43□□□□□ -2.02
USP54Q70EL1 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.43□□□□□ -2.02
USP54Q70EL1 CKAP2P1-201ENST00000555477 2049 ntBASIC2.43□□□□□ -2.02
USP54Q70EL1 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
USP54Q70EL1 MIRLET7G-201ENST00000362280 84 ntBASIC2.42□□□□□ -2.02
USP54Q70EL1 MIR153-1-201ENST00000384914 90 ntBASIC2.42□□□□□ -2.02
USP54Q70EL1 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.42□□□□□ -2.02
USP54Q70EL1 HMGB1P31-201ENST00000437242 427 ntBASIC2.42□□□□□ -2.02
USP54Q70EL1 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC2.42□□□□□ -2.02
USP54Q70EL1 AC090071.1-201ENST00000507713 644 ntBASIC2.42□□□□□ -2.02
USP54Q70EL1 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC2.42□□□□□ -2.02
USP54Q70EL1 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC2.42□□□□□ -2.02
USP54Q70EL1 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC2.42□□□□□ -2.02
USP54Q70EL1 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC2.42□□□□□ -2.02
USP54Q70EL1 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.42□□□□□ -2.02
USP54Q70EL1 MFF-206ENST00000392059 1710 ntTSL 5 BASIC2.42□□□□□ -2.02
USP54Q70EL1 EFTUD1P2-201ENST00000514817 1603 ntBASIC2.42□□□□□ -2.02
USP54Q70EL1 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC2.42□□□□□ -2.02
USP54Q70EL1 KPNA2P1-201ENST00000458289 1591 ntBASIC2.42□□□□□ -2.02
USP54Q70EL1 AC131280.1-202ENST00000624067 4211 ntBASIC2.41□□□□□ -2.02
USP54Q70EL1 MIR337-201ENST00000362281 93 ntBASIC2.41□□□□□ -2.02
USP54Q70EL1 AC019129.1-201ENST00000403786 261 ntBASIC2.41□□□□□ -2.02
USP54Q70EL1 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.41□□□□□ -2.02
USP54Q70EL1 AC023128.2-201ENST00000420880 1223 ntBASIC2.41□□□□□ -2.02
USP54Q70EL1 AL590762.3-201ENST00000436372 640 ntBASIC2.41□□□□□ -2.02
USP54Q70EL1 AL353898.1-201ENST00000444055 238 ntBASIC2.41□□□□□ -2.02
USP54Q70EL1 AC093392.2-201ENST00000450682 337 ntBASIC2.41□□□□□ -2.02
USP54Q70EL1 AL109741.2-201ENST00000455561 343 ntBASIC2.41□□□□□ -2.02
USP54Q70EL1 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC2.41□□□□□ -2.02
USP54Q70EL1 FABP5P6-201ENST00000510588 409 ntBASIC2.41□□□□□ -2.02
USP54Q70EL1 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC2.41□□□□□ -2.02
USP54Q70EL1 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC2.41□□□□□ -2.02
USP54Q70EL1 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC2.41□□□□□ -2.02
USP54Q70EL1 AC090751.1-201ENST00000566966 267 ntBASIC2.41□□□□□ -2.02
USP54Q70EL1 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC2.41□□□□□ -2.02
USP54Q70EL1 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC2.41□□□□□ -2.02
USP54Q70EL1 AP000553.5-201ENST00000641933 54 ntBASIC2.41□□□□□ -2.02
USP54Q70EL1 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC2.41□□□□□ -2.02
USP54Q70EL1 ZNF33CP-201ENST00000432492 2030 ntBASIC2.41□□□□□ -2.02
USP54Q70EL1 RNF6P1-201ENST00000444889 1784 ntBASIC2.41□□□□□ -2.02
USP54Q70EL1 AP000275.1-201ENST00000411943 390 ntBASIC2.41□□□□□ -2.02
USP54Q70EL1 RPL7P46-201ENST00000425129 740 ntBASIC2.41□□□□□ -2.02
USP54Q70EL1 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC2.41□□□□□ -2.02
USP54Q70EL1 AC146507.1-201ENST00000468335 354 ntBASIC2.41□□□□□ -2.02
USP54Q70EL1 AL163540.1-201ENST00000485382 386 ntBASIC2.41□□□□□ -2.02
USP54Q70EL1 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC2.41□□□□□ -2.02
USP54Q70EL1 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC2.41□□□□□ -2.02
USP54Q70EL1 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC2.41□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 95.9 ms