Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AL121594.5-201ENST00000631724 573 ntBASIC2.29□□□□□ -2.04
FOXA1P55317 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC2.29□□□□□ -2.04
FOXA1P55317 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.29□□□□□ -2.04
FOXA1P55317 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
FOXA1P55317 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC2.28□□□□□ -2.04
FOXA1P55317 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.28□□□□□ -2.04
FOXA1P55317 AL136520.1-201ENST00000600311 1322 ntBASIC2.28□□□□□ -2.04
FOXA1P55317 AC010733.2-201ENST00000589496 5702 ntBASIC2.28□□□□□ -2.04
FOXA1P55317 RNA5SP68-201ENST00000363885 119 ntBASIC2.28□□□□□ -2.04
FOXA1P55317 RNU6-353P-201ENST00000364266 108 ntBASIC2.28□□□□□ -2.04
FOXA1P55317 RNU6-619P-201ENST00000365146 108 ntBASIC2.28□□□□□ -2.04
FOXA1P55317 ZBTB8OS-202ENST00000373501 598 ntTSL 5 BASIC2.28□□□□□ -2.04
FOXA1P55317 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
FOXA1P55317 RNU6-354P-201ENST00000383862 107 ntBASIC2.28□□□□□ -2.04
FOXA1P55317 RNU1-138P-201ENST00000384093 164 ntBASIC2.28□□□□□ -2.04
FOXA1P55317 U6.112-201ENST00000384129 70 ntBASIC2.28□□□□□ -2.04
FOXA1P55317 RNU6-610P-201ENST00000384264 107 ntBASIC2.28□□□□□ -2.04
FOXA1P55317 MIR649-201ENST00000384843 97 ntBASIC2.28□□□□□ -2.04
FOXA1P55317 RPL22P22-201ENST00000395439 379 ntBASIC2.28□□□□□ -2.04
FOXA1P55317 RNA5SP56-201ENST00000410277 118 ntBASIC2.28□□□□□ -2.04
FOXA1P55317 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC2.28□□□□□ -2.04
FOXA1P55317 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC2.28□□□□□ -2.04
FOXA1P55317 TAF13P2-201ENST00000416876 286 ntBASIC2.28□□□□□ -2.04
FOXA1P55317 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC2.28□□□□□ -2.04
FOXA1P55317 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC2.28□□□□□ -2.04
FOXA1P55317 AC234064.1-201ENST00000436312 247 ntBASIC2.28□□□□□ -2.04
FOXA1P55317 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC2.28□□□□□ -2.04
FOXA1P55317 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC2.28□□□□□ -2.04
FOXA1P55317 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC2.28□□□□□ -2.04
FOXA1P55317 AL050341.1-201ENST00000447743 313 ntBASIC2.28□□□□□ -2.04
FOXA1P55317 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC2.28□□□□□ -2.04
FOXA1P55317 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC2.28□□□□□ -2.04
FOXA1P55317 HMGB1P22-201ENST00000505315 124 ntBASIC2.28□□□□□ -2.04
FOXA1P55317 AC109471.1-201ENST00000511631 612 ntBASIC2.28□□□□□ -2.04
FOXA1P55317 RNA5SP148-201ENST00000516527 94 ntBASIC2.28□□□□□ -2.04
FOXA1P55317 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC2.28□□□□□ -2.04
FOXA1P55317 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC2.28□□□□□ -2.04
FOXA1P55317 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC2.28□□□□□ -2.04
FOXA1P55317 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC2.28□□□□□ -2.04
FOXA1P55317 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC2.28□□□□□ -2.04
FOXA1P55317 AC027176.1-201ENST00000560204 514 ntBASIC2.28□□□□□ -2.04
FOXA1P55317 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC2.28□□□□□ -2.04
FOXA1P55317 AL669831.4-202ENST00000590817 238 ntBASIC2.28□□□□□ -2.04
FOXA1P55317 AC013468.1-201ENST00000608680 598 ntBASIC2.28□□□□□ -2.04
FOXA1P55317 AP005229.2-201ENST00000609980 697 ntBASIC2.28□□□□□ -2.04
FOXA1P55317 AC068722.2-201ENST00000618734 544 ntBASIC2.28□□□□□ -2.04
FOXA1P55317 AP000676.4-201ENST00000624659 623 ntBASIC2.28□□□□□ -2.04
FOXA1P55317 MIR1291-201ENST00000627649 87 ntBASIC2.28□□□□□ -2.04
FOXA1P55317 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.05
FOXA1P55317 AC016717.2-201ENST00000609089 5141 ntBASIC2.28□□□□□ -2.05
FOXA1P55317 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.05
FOXA1P55317 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC2.27□□□□□ -2.05
FOXA1P55317 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
FOXA1P55317 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC2.27□□□□□ -2.05
FOXA1P55317 RPL21P132-201ENST00000331267 462 ntBASIC2.27□□□□□ -2.05
FOXA1P55317 OR1L1-202ENST00000373686 1083 ntBASIC2.27□□□□□ -2.05
FOXA1P55317 DEFB109C-201ENST00000382575 264 ntBASIC2.27□□□□□ -2.05
FOXA1P55317 DEFB109B-201ENST00000382656 264 ntBASIC2.27□□□□□ -2.05
FOXA1P55317 RNU6-339P-201ENST00000384310 107 ntBASIC2.27□□□□□ -2.05
FOXA1P55317 MIR196B-201ENST00000384852 84 ntBASIC2.27□□□□□ -2.05
FOXA1P55317 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC2.27□□□□□ -2.05
FOXA1P55317 RNU2-72P-201ENST00000411175 163 ntBASIC2.27□□□□□ -2.05
FOXA1P55317 AC009963.1-201ENST00000417265 157 ntBASIC2.27□□□□□ -2.05
FOXA1P55317 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.27□□□□□ -2.05
FOXA1P55317 FO393414.1-201ENST00000428697 1184 ntBASIC2.27□□□□□ -2.05
FOXA1P55317 AL513328.1-201ENST00000446460 224 ntBASIC2.27□□□□□ -2.05
FOXA1P55317 AL096829.2-201ENST00000446582 742 ntBASIC2.27□□□□□ -2.05
FOXA1P55317 AC017099.1-201ENST00000448261 1028 ntBASIC2.27□□□□□ -2.05
FOXA1P55317 AC009961.3-201ENST00000449832 765 ntBASIC2.27□□□□□ -2.05
FOXA1P55317 AC104073.1-201ENST00000451988 151 ntBASIC2.27□□□□□ -2.05
FOXA1P55317 CCNB1IP1P3-201ENST00000454702 829 ntBASIC2.27□□□□□ -2.05
FOXA1P55317 XACT-201ENST00000468762 497 ntTSL 5 BASIC2.27□□□□□ -2.05
FOXA1P55317 AL024509.2-201ENST00000493462 493 ntBASIC2.27□□□□□ -2.05
FOXA1P55317 OR5H5P-201ENST00000503164 928 ntBASIC2.27□□□□□ -2.05
FOXA1P55317 AC027309.2-201ENST00000520566 192 ntBASIC2.27□□□□□ -2.05
FOXA1P55317 AP003385.6-201ENST00000531603 374 ntBASIC2.27□□□□□ -2.05
FOXA1P55317 AC087241.2-201ENST00000535801 324 ntBASIC2.27□□□□□ -2.05
FOXA1P55317 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC2.27□□□□□ -2.05
FOXA1P55317 AC093510.2-201ENST00000562820 896 ntBASIC2.27□□□□□ -2.05
FOXA1P55317 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC2.27□□□□□ -2.05
FOXA1P55317 AC091057.2-201ENST00000602594 792 ntBASIC2.27□□□□□ -2.05
FOXA1P55317 AC092474.3-201ENST00000603022 568 ntBASIC2.27□□□□□ -2.05
FOXA1P55317 AC007621.1-201ENST00000604544 437 ntBASIC2.27□□□□□ -2.05
FOXA1P55317 DPRXP5-201ENST00000604662 539 ntBASIC2.27□□□□□ -2.05
FOXA1P55317 AC103810.6-201ENST00000606708 136 ntBASIC2.27□□□□□ -2.05
FOXA1P55317 AC046143.2-201ENST00000609789 160 ntBASIC2.27□□□□□ -2.05
FOXA1P55317 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
FOXA1P55317 MIR6817-201ENST00000615588 66 ntBASIC2.27□□□□□ -2.05
FOXA1P55317 AC090116.1-201ENST00000615679 446 ntBASIC2.27□□□□□ -2.05
FOXA1P55317 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
FOXA1P55317 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC2.27□□□□□ -2.05
FOXA1P55317 AC006963.1-201ENST00000624003 1052 ntBASIC2.27□□□□□ -2.05
FOXA1P55317 FO624990.1-201ENST00000636373 85 ntBASIC2.27□□□□□ -2.05
FOXA1P55317 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC2.27□□□□□ -2.05
FOXA1P55317 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
FOXA1P55317 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.26□□□□□ -2.05
FOXA1P55317 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC2.26□□□□□ -2.05
FOXA1P55317 RNU6-989P-201ENST00000362756 107 ntBASIC2.26□□□□□ -2.05
FOXA1P55317 Y_RNA.110-201ENST00000363220 99 ntBASIC2.26□□□□□ -2.05
FOXA1P55317 RNU6ATAC16P-201ENST00000408591 138 ntBASIC2.26□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 94.7 ms