Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
VMP1Q96GC9 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
VMP1Q96GC9 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
VMP1Q96GC9 DDX43P2-201ENST00000604753 1354 ntBASIC3.42□□□□□ -1.86
VMP1Q96GC9 Y_RNA.192-201ENST00000363977 102 ntBASIC3.42□□□□□ -1.86
VMP1Q96GC9 SNORD116.1-201ENST00000365628 92 ntBASIC3.42□□□□□ -1.86
VMP1Q96GC9 ATP5F1P3-201ENST00000397213 657 ntBASIC3.42□□□□□ -1.86
VMP1Q96GC9 AL031121.1-201ENST00000406553 254 ntBASIC3.42□□□□□ -1.86
VMP1Q96GC9 USP9YP33-201ENST00000412220 421 ntBASIC3.42□□□□□ -1.86
VMP1Q96GC9 ATP5A1P2-201ENST00000412323 255 ntBASIC3.42□□□□□ -1.86
VMP1Q96GC9 RPL7P10-201ENST00000417407 739 ntBASIC3.42□□□□□ -1.86
VMP1Q96GC9 HMGB3P20-201ENST00000417997 600 ntBASIC3.42□□□□□ -1.86
VMP1Q96GC9 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC3.42□□□□□ -1.86
VMP1Q96GC9 AL513175.2-201ENST00000422071 443 ntBASIC3.42□□□□□ -1.86
VMP1Q96GC9 AC006989.1-201ENST00000427212 131 ntBASIC3.42□□□□□ -1.86
VMP1Q96GC9 SETP8-201ENST00000435341 628 ntBASIC3.42□□□□□ -1.86
VMP1Q96GC9 USP9YP35-201ENST00000435696 412 ntBASIC3.42□□□□□ -1.86
VMP1Q96GC9 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC3.42□□□□□ -1.86
VMP1Q96GC9 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC3.42□□□□□ -1.86
VMP1Q96GC9 SUN3-208ENST00000453192 801 ntTSL 5 BASIC3.42□□□□□ -1.86
VMP1Q96GC9 AL109741.2-201ENST00000455561 343 ntBASIC3.42□□□□□ -1.86
VMP1Q96GC9 RN7SL601P-201ENST00000471221 293 ntBASIC3.42□□□□□ -1.86
VMP1Q96GC9 AC021382.1-201ENST00000483523 359 ntBASIC3.42□□□□□ -1.86
VMP1Q96GC9 MTND3P3-201ENST00000505004 126 ntBASIC3.42□□□□□ -1.86
VMP1Q96GC9 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.42□□□□□ -1.86
VMP1Q96GC9 RNU6-928P-201ENST00000516876 104 ntBASIC3.42□□□□□ -1.86
VMP1Q96GC9 RNU6-56P-201ENST00000516986 93 ntBASIC3.42□□□□□ -1.86
VMP1Q96GC9 AC026403.1-201ENST00000518938 295 ntBASIC3.42□□□□□ -1.86
VMP1Q96GC9 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
VMP1Q96GC9 AC006518.1-201ENST00000541449 943 ntBASIC3.42□□□□□ -1.86
VMP1Q96GC9 AC004024.1-201ENST00000549244 247 ntBASIC3.42□□□□□ -1.86
VMP1Q96GC9 ARL1-211ENST00000551828 776 ntTSL 5 BASIC3.42□□□□□ -1.86
VMP1Q96GC9 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC3.42□□□□□ -1.86
VMP1Q96GC9 AL132857.1-201ENST00000555180 708 ntBASIC3.42□□□□□ -1.86
VMP1Q96GC9 AC023813.2-201ENST00000564321 469 ntBASIC3.42□□□□□ -1.86
VMP1Q96GC9 AMZ2P1-203ENST00000565833 850 ntBASIC3.42□□□□□ -1.86
VMP1Q96GC9 HMGB1P6-201ENST00000569046 646 ntBASIC3.42□□□□□ -1.86
VMP1Q96GC9 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC3.42□□□□□ -1.86
VMP1Q96GC9 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
VMP1Q96GC9 RPL23AP84-201ENST00000571193 464 ntBASIC3.42□□□□□ -1.86
VMP1Q96GC9 TMF1P1-201ENST00000576058 373 ntBASIC3.42□□□□□ -1.86
VMP1Q96GC9 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC3.42□□□□□ -1.86
VMP1Q96GC9 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC3.42□□□□□ -1.86
VMP1Q96GC9 AL160237.3-201ENST00000604114 1013 ntBASIC3.42□□□□□ -1.86
VMP1Q96GC9 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.42□□□□□ -1.86
VMP1Q96GC9 AC245297.2-201ENST00000610119 565 ntBASIC3.42□□□□□ -1.86
VMP1Q96GC9 AL034408.1-202ENST00000636088 415 ntBASIC3.42□□□□□ -1.86
VMP1Q96GC9 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC3.42□□□□□ -1.86
VMP1Q96GC9 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
VMP1Q96GC9 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.42□□□□□ -1.86
VMP1Q96GC9 AL513302.2-201ENST00000562313 1842 ntBASIC3.42□□□□□ -1.86
VMP1Q96GC9 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC3.42□□□□□ -1.86
VMP1Q96GC9 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
VMP1Q96GC9 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
VMP1Q96GC9 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
VMP1Q96GC9 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
VMP1Q96GC9 AP000526.1-201ENST00000603308 1388 ntBASIC3.41□□□□□ -1.86
VMP1Q96GC9 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
VMP1Q96GC9 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
VMP1Q96GC9 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.41□□□□□ -1.86
VMP1Q96GC9 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
VMP1Q96GC9 RNA5SP51-201ENST00000364750 119 ntBASIC3.41□□□□□ -1.86
VMP1Q96GC9 SNORA73.2-201ENST00000364946 201 ntBASIC3.41□□□□□ -1.86
VMP1Q96GC9 MIR325-201ENST00000385260 98 ntBASIC3.41□□□□□ -1.86
VMP1Q96GC9 RPL7P60-201ENST00000397636 735 ntBASIC3.41□□□□□ -1.86
VMP1Q96GC9 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
VMP1Q96GC9 RNA5SP31-201ENST00000411144 127 ntBASIC3.41□□□□□ -1.86
VMP1Q96GC9 AL645937.1-202ENST00000421799 937 ntBASIC3.41□□□□□ -1.86
VMP1Q96GC9 SAR1AP4-201ENST00000429225 591 ntBASIC3.41□□□□□ -1.86
VMP1Q96GC9 AL512844.2-201ENST00000433990 593 ntBASIC3.41□□□□□ -1.86
VMP1Q96GC9 ZNF736P1Y-201ENST00000440402 1276 ntBASIC3.41□□□□□ -1.86
VMP1Q96GC9 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC3.41□□□□□ -1.86
VMP1Q96GC9 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC3.41□□□□□ -1.86
VMP1Q96GC9 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC3.41□□□□□ -1.86
VMP1Q96GC9 MTND2P39-201ENST00000457230 764 ntBASIC3.41□□□□□ -1.86
VMP1Q96GC9 SNORD105B-201ENST00000458770 79 ntBASIC3.41□□□□□ -1.86
VMP1Q96GC9 MEMO1P3-201ENST00000459811 302 ntBASIC3.41□□□□□ -1.86
VMP1Q96GC9 FCF1P3-201ENST00000496394 590 ntBASIC3.41□□□□□ -1.86
VMP1Q96GC9 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC3.41□□□□□ -1.86
VMP1Q96GC9 RAC1P5-201ENST00000512182 576 ntBASIC3.41□□□□□ -1.86
VMP1Q96GC9 AC024589.1-201ENST00000512207 263 ntBASIC3.41□□□□□ -1.86
VMP1Q96GC9 TTC39CP1-201ENST00000512513 755 ntBASIC3.41□□□□□ -1.86
VMP1Q96GC9 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC3.41□□□□□ -1.86
VMP1Q96GC9 RNU6-1256P-201ENST00000516539 103 ntBASIC3.41□□□□□ -1.86
VMP1Q96GC9 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC3.41□□□□□ -1.86
VMP1Q96GC9 RANP9-201ENST00000519957 271 ntBASIC3.41□□□□□ -1.86
VMP1Q96GC9 GTF2IP22-201ENST00000554443 182 ntBASIC3.41□□□□□ -1.86
VMP1Q96GC9 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC3.41□□□□□ -1.86
VMP1Q96GC9 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC3.41□□□□□ -1.86
VMP1Q96GC9 AC078899.3-201ENST00000599065 212 ntBASIC3.41□□□□□ -1.86
VMP1Q96GC9 RPL23AP78-201ENST00000599928 470 ntBASIC3.41□□□□□ -1.86
VMP1Q96GC9 U73023.1-201ENST00000603134 700 ntBASIC3.41□□□□□ -1.86
VMP1Q96GC9 AL603758.1-201ENST00000618654 241 ntBASIC3.41□□□□□ -1.86
VMP1Q96GC9 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC3.41□□□□□ -1.86
VMP1Q96GC9 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
VMP1Q96GC9 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.41□□□□□ -1.86
VMP1Q96GC9 CD36-221ENST00000534394 1741 ntTSL 2 BASIC3.41□□□□□ -1.86
VMP1Q96GC9 AC011477.1-204ENST00000623416 1325 ntBASIC3.41□□□□□ -1.86
VMP1Q96GC9 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
VMP1Q96GC9 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 92.5 ms