Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 U2.1-201ENST00000618978 145 ntBASIC5.25□□□□□ -1.57
SOX4Q06945 CR381572.2-201ENST00000624852 397 ntBASIC5.25□□□□□ -1.57
SOX4Q06945 TPTE2P4-201ENST00000258589 1605 ntBASIC5.25□□□□□ -1.57
SOX4Q06945 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5.25□□□□□ -1.57
SOX4Q06945 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SOX4Q06945 AC008758.3-201ENST00000507003 1829 ntBASIC5.25□□□□□ -1.57
SOX4Q06945 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC5.25□□□□□ -1.57
SOX4Q06945 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SOX4Q06945 AL606537.1-201ENST00000607258 2011 ntBASIC5.24□□□□□ -1.57
SOX4Q06945 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SOX4Q06945 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.24□□□□□ -1.57
SOX4Q06945 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
SOX4Q06945 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
SOX4Q06945 AL158163.1-201ENST00000603915 1649 ntBASIC5.24□□□□□ -1.57
SOX4Q06945 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC5.24□□□□□ -1.57
SOX4Q06945 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SOX4Q06945 RNU6-562P-201ENST00000362731 107 ntBASIC5.24□□□□□ -1.57
SOX4Q06945 RNA5SP505-201ENST00000364748 108 ntBASIC5.24□□□□□ -1.57
SOX4Q06945 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SOX4Q06945 SNORA75.6-201ENST00000391318 127 ntBASIC5.24□□□□□ -1.57
SOX4Q06945 RPL21P67-201ENST00000402896 478 ntBASIC5.24□□□□□ -1.57
SOX4Q06945 AL358176.3-201ENST00000420757 454 ntBASIC5.24□□□□□ -1.57
SOX4Q06945 AC008267.5-201ENST00000424928 265 ntBASIC5.24□□□□□ -1.57
SOX4Q06945 AL353691.1-201ENST00000451332 387 ntBASIC5.24□□□□□ -1.57
SOX4Q06945 AC116533.1-201ENST00000459748 321 ntBASIC5.24□□□□□ -1.57
SOX4Q06945 AC092451.1-201ENST00000480211 153 ntBASIC5.24□□□□□ -1.57
SOX4Q06945 AC116337.1-201ENST00000509680 687 ntBASIC5.24□□□□□ -1.57
SOX4Q06945 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC5.24□□□□□ -1.57
SOX4Q06945 RN7SKP276-201ENST00000516242 268 ntBASIC5.24□□□□□ -1.57
SOX4Q06945 Y_RNA.708-201ENST00000516950 96 ntBASIC5.24□□□□□ -1.57
SOX4Q06945 CARD16-203ENST00000525374 503 ntTSL 3 BASIC5.24□□□□□ -1.57
SOX4Q06945 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC5.24□□□□□ -1.57
SOX4Q06945 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC5.24□□□□□ -1.57
SOX4Q06945 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC5.24□□□□□ -1.57
SOX4Q06945 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC5.24□□□□□ -1.57
SOX4Q06945 PSMA6P4-201ENST00000603247 718 ntBASIC5.24□□□□□ -1.57
SOX4Q06945 AC023813.4-201ENST00000607580 580 ntBASIC5.24□□□□□ -1.57
SOX4Q06945 AC009229.3-201ENST00000608056 282 ntBASIC5.24□□□□□ -1.57
SOX4Q06945 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SOX4Q06945 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SOX4Q06945 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC5.24□□□□□ -1.57
SOX4Q06945 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
SOX4Q06945 AL445437.1-201ENST00000623157 3087 ntBASIC5.24□□□□□ -1.57
SOX4Q06945 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
SOX4Q06945 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SOX4Q06945 PAPPA-AS1-201ENST00000445861 2450 ntBASIC5.23□□□□□ -1.57
SOX4Q06945 AC005592.1-201ENST00000566527 1640 ntBASIC5.23□□□□□ -1.57
SOX4Q06945 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
SOX4Q06945 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC5.23□□□□□ -1.57
SOX4Q06945 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
SOX4Q06945 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC5.23□□□□□ -1.57
SOX4Q06945 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
SOX4Q06945 Z95114.1-201ENST00000624264 14574 ntBASIC5.23□□□□□ -1.57
SOX4Q06945 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5.23□□□□□ -1.57
SOX4Q06945 RNU6-490P-201ENST00000362985 107 ntBASIC5.23□□□□□ -1.57
SOX4Q06945 RNA5SP443-201ENST00000363083 132 ntBASIC5.23□□□□□ -1.57
SOX4Q06945 RNA5SP391-201ENST00000363456 119 ntBASIC5.23□□□□□ -1.57
SOX4Q06945 Y_RNA.389-201ENST00000383924 113 ntBASIC5.23□□□□□ -1.57
SOX4Q06945 Y_RNA.404-201ENST00000383978 102 ntBASIC5.23□□□□□ -1.57
SOX4Q06945 RNU6-398P-201ENST00000384143 109 ntBASIC5.23□□□□□ -1.57
SOX4Q06945 Y_RNA.489-201ENST00000384410 101 ntBASIC5.23□□□□□ -1.57
SOX4Q06945 RNU6-1109P-201ENST00000391187 107 ntBASIC5.23□□□□□ -1.57
SOX4Q06945 NDUFS5P1-201ENST00000405668 289 ntBASIC5.23□□□□□ -1.57
SOX4Q06945 RPL7P10-201ENST00000417407 739 ntBASIC5.23□□□□□ -1.57
SOX4Q06945 AC092162.1-201ENST00000432828 434 ntBASIC5.23□□□□□ -1.57
SOX4Q06945 AC005154.2-201ENST00000438110 379 ntBASIC5.23□□□□□ -1.57
SOX4Q06945 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
SOX4Q06945 AC073264.2-201ENST00000448886 166 ntBASIC5.23□□□□□ -1.57
SOX4Q06945 RPS24P6-201ENST00000452670 400 ntBASIC5.23□□□□□ -1.57
SOX4Q06945 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC5.23□□□□□ -1.57
SOX4Q06945 SCARNA22-201ENST00000503991 125 ntBASIC5.23□□□□□ -1.57
SOX4Q06945 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC5.23□□□□□ -1.57
SOX4Q06945 RNU6-470P-201ENST00000515954 104 ntBASIC5.23□□□□□ -1.57
SOX4Q06945 AP006289.1-201ENST00000538089 277 ntBASIC5.23□□□□□ -1.57
SOX4Q06945 AL133271.1-201ENST00000538229 291 ntBASIC5.23□□□□□ -1.57
SOX4Q06945 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC5.23□□□□□ -1.57
SOX4Q06945 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC5.23□□□□□ -1.57
SOX4Q06945 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC5.23□□□□□ -1.57
SOX4Q06945 AL390726.5-202ENST00000564800 256 ntBASIC5.23□□□□□ -1.57
SOX4Q06945 MIR6780A-201ENST00000615089 68 ntBASIC5.23□□□□□ -1.57
SOX4Q06945 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SOX4Q06945 AL445363.3-201ENST00000623080 671 ntBASIC5.23□□□□□ -1.57
SOX4Q06945 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC5.23□□□□□ -1.57
SOX4Q06945 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
SOX4Q06945 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SOX4Q06945 NRK-204ENST00000540278 1687 ntTSL 2 BASIC5.23□□□□□ -1.57
SOX4Q06945 DLD-204ENST00000437604 1859 ntTSL 2 BASIC5.23□□□□□ -1.57
SOX4Q06945 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
SOX4Q06945 ADAM5-202ENST00000399789 1942 ntBASIC5.23□□□□□ -1.57
SOX4Q06945 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC5.23□□□□□ -1.57
SOX4Q06945 LCMT1-AS2-202ENST00000565214 5666 ntBASIC5.23□□□□□ -1.57
SOX4Q06945 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
SOX4Q06945 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
SOX4Q06945 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC5.22□□□□□ -1.57
SOX4Q06945 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
SOX4Q06945 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
SOX4Q06945 AC079741.1-201ENST00000321498 212 ntBASIC5.22□□□□□ -1.57
SOX4Q06945 RNU6-1243P-201ENST00000364028 107 ntBASIC5.22□□□□□ -1.57
SOX4Q06945 RNU6-550P-201ENST00000391057 101 ntBASIC5.22□□□□□ -1.57
SOX4Q06945 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC5.22□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 87.7 ms