Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC1.29□□□□□ -2.2
COL7A1Q02388 MIR6073-201ENST00000352083 89 ntBASIC1.29□□□□□ -2.2
COL7A1Q02388 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC1.29□□□□□ -2.2
COL7A1Q02388 NDUFS5P3-201ENST00000450668 321 ntBASIC1.29□□□□□ -2.2
COL7A1Q02388 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC1.29□□□□□ -2.2
COL7A1Q02388 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC1.29□□□□□ -2.2
COL7A1Q02388 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC1.29□□□□□ -2.2
COL7A1Q02388 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC1.29□□□□□ -2.2
COL7A1Q02388 AC002546.1-201ENST00000588041 2504 ntBASIC1.29□□□□□ -2.2
COL7A1Q02388 RNU6-1032P-201ENST00000384100 107 ntBASIC1.29□□□□□ -2.2
COL7A1Q02388 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC1.29□□□□□ -2.2
COL7A1Q02388 RNA5SP476-201ENST00000516613 103 ntBASIC1.29□□□□□ -2.2
COL7A1Q02388 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC1.29□□□□□ -2.2
COL7A1Q02388 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC1.29□□□□□ -2.2
COL7A1Q02388 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC1.29□□□□□ -2.2
COL7A1Q02388 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC1.29□□□□□ -2.2
COL7A1Q02388 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC1.29□□□□□ -2.2
COL7A1Q02388 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC1.29□□□□□ -2.2
COL7A1Q02388 AC104581.2-201ENST00000572227 430 ntBASIC1.29□□□□□ -2.2
COL7A1Q02388 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC1.29□□□□□ -2.2
COL7A1Q02388 AC010678.1-201ENST00000614118 713 ntBASIC1.29□□□□□ -2.2
COL7A1Q02388 FAM35CP-201ENST00000554755 2470 ntBASIC1.28□□□□□ -2.2
COL7A1Q02388 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC1.28□□□□□ -2.2
COL7A1Q02388 XIAPP3-201ENST00000312918 795 ntBASIC1.28□□□□□ -2.2
COL7A1Q02388 TAS2R15P-201ENST00000390674 928 ntBASIC1.28□□□□□ -2.2
COL7A1Q02388 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC1.28□□□□□ -2.2
COL7A1Q02388 RPL7P46-201ENST00000425129 740 ntBASIC1.28□□□□□ -2.2
COL7A1Q02388 AC244033.1-201ENST00000426826 870 ntBASIC1.28□□□□□ -2.2
COL7A1Q02388 ATP5F1P1-201ENST00000433775 569 ntBASIC1.28□□□□□ -2.2
COL7A1Q02388 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC1.28□□□□□ -2.2
COL7A1Q02388 RPL23AP62-201ENST00000463396 453 ntBASIC1.28□□□□□ -2.2
COL7A1Q02388 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC1.28□□□□□ -2.2
COL7A1Q02388 ATG10-AS1-201ENST00000504846 648 ntBASIC1.28□□□□□ -2.2
COL7A1Q02388 SNORA25.15-201ENST00000516487 89 ntBASIC1.28□□□□□ -2.2
COL7A1Q02388 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC1.28□□□□□ -2.2
COL7A1Q02388 AC091488.1-201ENST00000604239 660 ntBASIC1.28□□□□□ -2.2
COL7A1Q02388 AP000787.2-201ENST00000604432 568 ntBASIC1.28□□□□□ -2.2
COL7A1Q02388 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC1.28□□□□□ -2.2
COL7A1Q02388 AP001005.3-201ENST00000622049 129 ntBASIC1.28□□□□□ -2.2
COL7A1Q02388 AC073348.1-201ENST00000623002 331 ntBASIC1.28□□□□□ -2.2
COL7A1Q02388 AP003499.2-201ENST00000624100 483 ntBASIC1.28□□□□□ -2.2
COL7A1Q02388 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC1.28□□□□□ -2.2
COL7A1Q02388 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC1.28□□□□□ -2.2
COL7A1Q02388 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
COL7A1Q02388 SNORD88.1-201ENST00000408684 91 ntBASIC1.28□□□□□ -2.2
COL7A1Q02388 AC092155.2-201ENST00000454675 477 ntBASIC1.28□□□□□ -2.2
COL7A1Q02388 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
COL7A1Q02388 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC1.28□□□□□ -2.2
COL7A1Q02388 AP002748.2-201ENST00000528671 348 ntBASIC1.28□□□□□ -2.2
COL7A1Q02388 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC1.28□□□□□ -2.2
COL7A1Q02388 AC006023.2-201ENST00000609916 167 ntBASIC1.28□□□□□ -2.2
COL7A1Q02388 MIR7973-1-201ENST00000614683 76 ntBASIC1.28□□□□□ -2.2
COL7A1Q02388 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.28□□□□□ -2.2
COL7A1Q02388 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
COL7A1Q02388 RBM12B-AS1-201ENST00000623283 653 ntBASIC1.28□□□□□ -2.2
COL7A1Q02388 AC244517.1-201ENST00000606030 2086 ntBASIC1.27□□□□□ -2.21
COL7A1Q02388 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC1.27□□□□□ -2.21
COL7A1Q02388 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC1.27□□□□□ -2.21
COL7A1Q02388 RPS27P5-201ENST00000444247 244 ntBASIC1.27□□□□□ -2.21
COL7A1Q02388 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC1.27□□□□□ -2.21
COL7A1Q02388 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC1.27□□□□□ -2.21
COL7A1Q02388 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC1.27□□□□□ -2.21
COL7A1Q02388 MTND5P21-201ENST00000531961 522 ntBASIC1.27□□□□□ -2.21
COL7A1Q02388 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.27□□□□□ -2.21
COL7A1Q02388 AC124283.4-201ENST00000581815 456 ntBASIC1.27□□□□□ -2.21
COL7A1Q02388 AC105429.2-201ENST00000610567 517 ntBASIC1.27□□□□□ -2.21
COL7A1Q02388 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC1.27□□□□□ -2.21
COL7A1Q02388 Z98749.2-208ENST00000381646 500 ntBASIC1.27□□□□□ -2.21
COL7A1Q02388 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.27□□□□□ -2.21
COL7A1Q02388 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC1.27□□□□□ -2.21
COL7A1Q02388 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC1.27□□□□□ -2.21
COL7A1Q02388 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC1.27□□□□□ -2.21
COL7A1Q02388 AC099778.2-201ENST00000610904 211 ntBASIC1.27□□□□□ -2.21
COL7A1Q02388 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.27□□□□□ -2.21
COL7A1Q02388 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC1.27□□□□□ -2.21
COL7A1Q02388 CKAP2P1-201ENST00000555477 2049 ntBASIC1.27□□□□□ -2.21
COL7A1Q02388 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
COL7A1Q02388 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC1.26□□□□□ -2.21
COL7A1Q02388 Y_RNA.433-201ENST00000384089 102 ntBASIC1.26□□□□□ -2.21
COL7A1Q02388 U3.37-201ENST00000408528 213 ntBASIC1.26□□□□□ -2.21
COL7A1Q02388 AP000705.1-201ENST00000454567 350 ntBASIC1.26□□□□□ -2.21
COL7A1Q02388 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC1.26□□□□□ -2.21
COL7A1Q02388 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC1.26□□□□□ -2.21
COL7A1Q02388 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC1.26□□□□□ -2.21
COL7A1Q02388 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC1.26□□□□□ -2.21
COL7A1Q02388 ZNF720P1-201ENST00000562403 1939 ntBASIC1.26□□□□□ -2.21
COL7A1Q02388 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
COL7A1Q02388 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC1.26□□□□□ -2.21
COL7A1Q02388 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC1.26□□□□□ -2.21
COL7A1Q02388 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC1.26□□□□□ -2.21
COL7A1Q02388 AL138787.1-202ENST00000437804 898 ntBASIC1.26□□□□□ -2.21
COL7A1Q02388 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.26□□□□□ -2.21
COL7A1Q02388 AC016957.1-201ENST00000534895 309 ntBASIC1.26□□□□□ -2.21
COL7A1Q02388 AC107294.3-201ENST00000609211 526 ntBASIC1.26□□□□□ -2.21
COL7A1Q02388 MTND5P12-201ENST00000502851 1449 ntBASIC1.26□□□□□ -2.21
COL7A1Q02388 SNORA62.2-201ENST00000364672 152 ntBASIC1.26□□□□□ -2.21
COL7A1Q02388 RNU6-53P-201ENST00000365367 106 ntBASIC1.26□□□□□ -2.21
COL7A1Q02388 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC1.26□□□□□ -2.21
COL7A1Q02388 MTCYBP17-201ENST00000503579 789 ntBASIC1.26□□□□□ -2.21
COL7A1Q02388 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.26□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 83.1 ms