Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC009159.1-201ENST00000618386 642 ntBASIC4.56□□□□□ -1.68
SMARCA1P28370 AL713922.2-201ENST00000619384 716 ntBASIC4.56□□□□□ -1.68
SMARCA1P28370 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC4.56□□□□□ -1.68
SMARCA1P28370 C2orf27A-204ENST00000623058 969 ntBASIC4.56□□□□□ -1.68
SMARCA1P28370 AC091925.2-201ENST00000625059 256 ntBASIC4.56□□□□□ -1.68
SMARCA1P28370 PISRT1-201ENST00000626175 531 ntBASIC4.56□□□□□ -1.68
SMARCA1P28370 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC4.56□□□□□ -1.68
SMARCA1P28370 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SMARCA1P28370 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SMARCA1P28370 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.56□□□□□ -1.68
SMARCA1P28370 MTND5P33-201ENST00000571250 1450 ntBASIC4.56□□□□□ -1.68
SMARCA1P28370 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SMARCA1P28370 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SMARCA1P28370 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
SMARCA1P28370 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC4.55□□□□□ -1.68
SMARCA1P28370 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.55□□□□□ -1.68
SMARCA1P28370 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.55□□□□□ -1.68
SMARCA1P28370 MAPK10-372ENST00000641954 3413 ntBASIC4.55□□□□□ -1.68
SMARCA1P28370 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SMARCA1P28370 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC4.55□□□□□ -1.68
SMARCA1P28370 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SMARCA1P28370 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4.55□□□□□ -1.68
SMARCA1P28370 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SMARCA1P28370 RHOT1P2-201ENST00000366423 333 ntBASIC4.55□□□□□ -1.68
SMARCA1P28370 Y_RNA.554-201ENST00000384672 102 ntBASIC4.55□□□□□ -1.68
SMARCA1P28370 MIR513A2-201ENST00000385249 127 ntBASIC4.55□□□□□ -1.68
SMARCA1P28370 MIR199A2-201ENST00000385289 110 ntBASIC4.55□□□□□ -1.68
SMARCA1P28370 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC4.55□□□□□ -1.68
SMARCA1P28370 ISCA1P6-201ENST00000427740 390 ntBASIC4.55□□□□□ -1.68
SMARCA1P28370 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC4.55□□□□□ -1.68
SMARCA1P28370 ATP5HP2-201ENST00000433885 485 ntBASIC4.55□□□□□ -1.68
SMARCA1P28370 AL353691.1-201ENST00000451332 387 ntBASIC4.55□□□□□ -1.68
SMARCA1P28370 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC4.55□□□□□ -1.68
SMARCA1P28370 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC4.55□□□□□ -1.68
SMARCA1P28370 RPS20P24-201ENST00000457473 361 ntBASIC4.55□□□□□ -1.68
SMARCA1P28370 RPS4XP10-201ENST00000465034 731 ntBASIC4.55□□□□□ -1.68
SMARCA1P28370 RN7SL132P-201ENST00000478131 296 ntBASIC4.55□□□□□ -1.68
SMARCA1P28370 AC146944.2-203ENST00000502493 354 ntBASIC4.55□□□□□ -1.68
SMARCA1P28370 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC4.55□□□□□ -1.68
SMARCA1P28370 AC139495.1-202ENST00000513164 354 ntBASIC4.55□□□□□ -1.68
SMARCA1P28370 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC4.55□□□□□ -1.68
SMARCA1P28370 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC4.55□□□□□ -1.68
SMARCA1P28370 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC4.55□□□□□ -1.68
SMARCA1P28370 AC022616.6-201ENST00000520479 119 ntBASIC4.55□□□□□ -1.68
SMARCA1P28370 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SMARCA1P28370 CCNG2P1-201ENST00000549521 1000 ntBASIC4.55□□□□□ -1.68
SMARCA1P28370 AC124947.2-202ENST00000552735 133 ntBASIC4.55□□□□□ -1.68
SMARCA1P28370 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC4.55□□□□□ -1.68
SMARCA1P28370 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC4.55□□□□□ -1.68
SMARCA1P28370 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.55□□□□□ -1.68
SMARCA1P28370 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC4.55□□□□□ -1.68
SMARCA1P28370 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC4.55□□□□□ -1.68
SMARCA1P28370 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC4.55□□□□□ -1.68
SMARCA1P28370 UBE2L4-201ENST00000587688 464 ntBASIC4.55□□□□□ -1.68
SMARCA1P28370 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC4.55□□□□□ -1.68
SMARCA1P28370 AC005255.1-201ENST00000593748 216 ntBASIC4.55□□□□□ -1.68
SMARCA1P28370 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC4.55□□□□□ -1.68
SMARCA1P28370 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC4.55□□□□□ -1.68
SMARCA1P28370 AL365503.1-201ENST00000605247 905 ntBASIC4.55□□□□□ -1.68
SMARCA1P28370 RNU6-87P-201ENST00000607561 108 ntBASIC4.55□□□□□ -1.68
SMARCA1P28370 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC4.55□□□□□ -1.68
SMARCA1P28370 AC136475.10-201ENST00000620253 385 ntBASIC4.55□□□□□ -1.68
SMARCA1P28370 AL158801.5-201ENST00000623123 465 ntBASIC4.55□□□□□ -1.68
SMARCA1P28370 AC068880.5-201ENST00000624331 290 ntBASIC4.55□□□□□ -1.68
SMARCA1P28370 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC4.55□□□□□ -1.68
SMARCA1P28370 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
SMARCA1P28370 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
SMARCA1P28370 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
SMARCA1P28370 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.54□□□□□ -1.68
SMARCA1P28370 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SMARCA1P28370 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC4.54□□□□□ -1.68
SMARCA1P28370 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
SMARCA1P28370 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
SMARCA1P28370 GNG5P1-201ENST00000255500 204 ntBASIC4.54□□□□□ -1.68
SMARCA1P28370 FRG1BP-201ENST00000278882 761 ntBASIC4.54□□□□□ -1.68
SMARCA1P28370 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC4.54□□□□□ -1.68
SMARCA1P28370 RNA5SP39-201ENST00000411245 120 ntBASIC4.54□□□□□ -1.68
SMARCA1P28370 MTND1P23-201ENST00000416931 372 ntBASIC4.54□□□□□ -1.68
SMARCA1P28370 AL391219.1-201ENST00000422570 483 ntBASIC4.54□□□□□ -1.68
SMARCA1P28370 AL353777.1-201ENST00000425552 326 ntBASIC4.54□□□□□ -1.68
SMARCA1P28370 AC006548.1-201ENST00000427470 102 ntBASIC4.54□□□□□ -1.68
SMARCA1P28370 AL358934.1-201ENST00000432346 324 ntBASIC4.54□□□□□ -1.68
SMARCA1P28370 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC4.54□□□□□ -1.68
SMARCA1P28370 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC4.54□□□□□ -1.68
SMARCA1P28370 snoU13.3-201ENST00000459441 104 ntBASIC4.54□□□□□ -1.68
SMARCA1P28370 VN1R105P-201ENST00000486595 910 ntBASIC4.54□□□□□ -1.68
SMARCA1P28370 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC4.54□□□□□ -1.68
SMARCA1P28370 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC4.54□□□□□ -1.68
SMARCA1P28370 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
SMARCA1P28370 RNU6-27P-201ENST00000516146 107 ntBASIC4.54□□□□□ -1.68
SMARCA1P28370 Y_RNA.672-201ENST00000516289 104 ntBASIC4.54□□□□□ -1.68
SMARCA1P28370 AC134698.4-201ENST00000523451 826 ntBASIC4.54□□□□□ -1.68
SMARCA1P28370 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC4.54□□□□□ -1.68
SMARCA1P28370 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC4.54□□□□□ -1.68
SMARCA1P28370 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC4.54□□□□□ -1.68
SMARCA1P28370 AC006960.3-201ENST00000561845 705 ntBASIC4.54□□□□□ -1.68
SMARCA1P28370 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC4.54□□□□□ -1.68
SMARCA1P28370 AC074050.1-201ENST00000563247 211 ntBASIC4.54□□□□□ -1.68
SMARCA1P28370 AC120057.2-201ENST00000571520 271 ntBASIC4.54□□□□□ -1.68
SMARCA1P28370 RN7SL703P-201ENST00000578485 302 ntBASIC4.54□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms