Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gm37500-201ENSMUST00000192059 1443 ntBASIC19.26■□□□□ 0.67
Scn11aQ9R053 AC157650.3-201ENSMUST00000225058 1476 ntBASIC19.26■□□□□ 0.67
Scn11aQ9R053 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Scn11aQ9R053 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Scn11aQ9R053 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC19.26■□□□□ 0.67
Scn11aQ9R053 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC19.26■□□□□ 0.67
Scn11aQ9R053 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC19.26■□□□□ 0.67
Scn11aQ9R053 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC19.26■□□□□ 0.67
Scn11aQ9R053 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC19.26■□□□□ 0.67
Scn11aQ9R053 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Scn11aQ9R053 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Scn11aQ9R053 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn11aQ9R053 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Scn11aQ9R053 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn11aQ9R053 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn11aQ9R053 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn11aQ9R053 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Scn11aQ9R053 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn11aQ9R053 Gm11764-201ENSMUST00000120221 623 ntBASIC19.25■□□□□ 0.67
Scn11aQ9R053 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Scn11aQ9R053 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC19.25■□□□□ 0.67
Scn11aQ9R053 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC19.25■□□□□ 0.67
Scn11aQ9R053 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Scn11aQ9R053 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn11aQ9R053 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn11aQ9R053 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn11aQ9R053 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Scn11aQ9R053 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC19.25■□□□□ 0.67
Scn11aQ9R053 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn11aQ9R053 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Scn11aQ9R053 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
Scn11aQ9R053 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Scn11aQ9R053 Gm11795-201ENSMUST00000127180 396 ntTSL 5 BASIC19.24■□□□□ 0.67
Scn11aQ9R053 AC159114.1-201ENSMUST00000220349 266 ntBASIC19.24■□□□□ 0.67
Scn11aQ9R053 Gm8655-201ENSMUST00000221159 852 ntBASIC19.24■□□□□ 0.67
Scn11aQ9R053 AC159106.1-201ENSMUST00000224421 690 ntBASIC19.24■□□□□ 0.67
Scn11aQ9R053 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Scn11aQ9R053 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Scn11aQ9R053 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Scn11aQ9R053 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Scn11aQ9R053 AC122901.1-201ENSMUST00000214203 1790 ntBASIC19.24■□□□□ 0.67
Scn11aQ9R053 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Scn11aQ9R053 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Scn11aQ9R053 Gm7222-201ENSMUST00000117512 906 ntBASIC19.24■□□□□ 0.67
Scn11aQ9R053 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC19.24■□□□□ 0.67
Scn11aQ9R053 Gm8344-201ENSMUST00000119813 856 ntBASIC19.24■□□□□ 0.67
Scn11aQ9R053 Gm2308-201ENSMUST00000166539 1004 ntBASIC19.24■□□□□ 0.67
Scn11aQ9R053 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Scn11aQ9R053 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Scn11aQ9R053 Psmb4-201ENSMUST00000005923 1183 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Scn11aQ9R053 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Scn11aQ9R053 Gm15590-201ENSMUST00000078419 552 ntBASIC19.24■□□□□ 0.67
Scn11aQ9R053 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC19.24■□□□□ 0.67
Scn11aQ9R053 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Scn11aQ9R053 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Scn11aQ9R053 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Scn11aQ9R053 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
Scn11aQ9R053 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scn11aQ9R053 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scn11aQ9R053 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Scn11aQ9R053 T-201ENSMUST00000074667 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scn11aQ9R053 AC115863.1-201ENSMUST00000214815 1813 ntBASIC19.23■□□□□ 0.67
Scn11aQ9R053 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scn11aQ9R053 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scn11aQ9R053 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scn11aQ9R053 2210408F21Rik-210ENSMUST00000151076 539 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Scn11aQ9R053 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Scn11aQ9R053 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scn11aQ9R053 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
Scn11aQ9R053 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scn11aQ9R053 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scn11aQ9R053 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scn11aQ9R053 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scn11aQ9R053 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Scn11aQ9R053 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Scn11aQ9R053 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC19.22■□□□□ 0.67
Scn11aQ9R053 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC19.22■□□□□ 0.67
Scn11aQ9R053 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC19.22■□□□□ 0.67
Scn11aQ9R053 AC151286.1-201ENSMUST00000198489 145 ntBASIC19.22■□□□□ 0.67
Scn11aQ9R053 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC19.22■□□□□ 0.67
Scn11aQ9R053 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC19.22■□□□□ 0.67
Scn11aQ9R053 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Scn11aQ9R053 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Scn11aQ9R053 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
Scn11aQ9R053 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Scn11aQ9R053 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Scn11aQ9R053 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Scn11aQ9R053 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
Scn11aQ9R053 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Scn11aQ9R053 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Scn11aQ9R053 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Scn11aQ9R053 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Scn11aQ9R053 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Scn11aQ9R053 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Scn11aQ9R053 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC19.22■□□□□ 0.67
Scn11aQ9R053 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC19.22■□□□□ 0.67
Scn11aQ9R053 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC19.21■□□□□ 0.67
Scn11aQ9R053 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC19.21■□□□□ 0.67
Scn11aQ9R053 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Scn11aQ9R053 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms