Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Gm14464-201ENSMUST00000119658 1254 ntBASIC15.17■□□□□ 0.02
Cdc40Q9DC48 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC15.17■□□□□ 0.02
Cdc40Q9DC48 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Cdc40Q9DC48 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC15.17■□□□□ 0.02
Cdc40Q9DC48 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Cdc40Q9DC48 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Cdc40Q9DC48 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Cdc40Q9DC48 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Cdc40Q9DC48 Cep85l-205ENSMUST00000220443 7425 ntAPPRIS P2 TSL 5 BASIC15.17■□□□□ 0.02
Cdc40Q9DC48 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Cdc40Q9DC48 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
Cdc40Q9DC48 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cdc40Q9DC48 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cdc40Q9DC48 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
Cdc40Q9DC48 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC15.16■□□□□ 0.02
Cdc40Q9DC48 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC15.16■□□□□ 0.02
Cdc40Q9DC48 Gm11860-201ENSMUST00000122346 1010 ntBASIC15.16■□□□□ 0.02
Cdc40Q9DC48 AC122351.1-201ENSMUST00000220467 126 ntBASIC15.16■□□□□ 0.02
Cdc40Q9DC48 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cdc40Q9DC48 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
Cdc40Q9DC48 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cdc40Q9DC48 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cdc40Q9DC48 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cdc40Q9DC48 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC15.16■□□□□ 0.02
Cdc40Q9DC48 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cdc40Q9DC48 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Cdc40Q9DC48 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cdc40Q9DC48 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Cdc40Q9DC48 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Cdc40Q9DC48 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC15.15■□□□□ 0.02
Cdc40Q9DC48 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cdc40Q9DC48 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cdc40Q9DC48 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC15.15■□□□□ 0.02
Cdc40Q9DC48 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
Cdc40Q9DC48 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC15.15■□□□□ 0.02
Cdc40Q9DC48 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC15.15■□□□□ 0.02
Cdc40Q9DC48 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Cdc40Q9DC48 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Cdc40Q9DC48 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC15.15■□□□□ 0.02
Cdc40Q9DC48 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cdc40Q9DC48 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cdc40Q9DC48 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cdc40Q9DC48 Fam208b-201ENSMUST00000096069 8338 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cdc40Q9DC48 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cdc40Q9DC48 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Cdc40Q9DC48 Gm26917-202ENSMUST00000192833 3329 ntBASIC15.15■□□□□ 0.02
Cdc40Q9DC48 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Cdc40Q9DC48 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdc40Q9DC48 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdc40Q9DC48 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdc40Q9DC48 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC15.14■□□□□ 0.01
Cdc40Q9DC48 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdc40Q9DC48 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
Cdc40Q9DC48 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdc40Q9DC48 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdc40Q9DC48 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Cdc40Q9DC48 Gm6190-201ENSMUST00000220683 1374 ntBASIC15.14■□□□□ 0.01
Cdc40Q9DC48 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdc40Q9DC48 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdc40Q9DC48 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdc40Q9DC48 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdc40Q9DC48 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdc40Q9DC48 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdc40Q9DC48 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Cdc40Q9DC48 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdc40Q9DC48 Cdh11-201ENSMUST00000075190 5647 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdc40Q9DC48 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Cdc40Q9DC48 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC15.14■□□□□ 0.01
Cdc40Q9DC48 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Cdc40Q9DC48 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Cdc40Q9DC48 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC15.14■□□□□ 0.01
Cdc40Q9DC48 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Cdc40Q9DC48 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdc40Q9DC48 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC15.13■□□□□ 0.01
Cdc40Q9DC48 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdc40Q9DC48 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdc40Q9DC48 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Cdc40Q9DC48 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdc40Q9DC48 Zc3h13-203ENSMUST00000227049 6144 ntAPPRIS ALT2 BASIC15.13■□□□□ 0.01
Cdc40Q9DC48 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC15.13■□□□□ 0.01
Cdc40Q9DC48 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdc40Q9DC48 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Cdc40Q9DC48 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Cdc40Q9DC48 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdc40Q9DC48 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC15.13■□□□□ 0.01
Cdc40Q9DC48 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Cdc40Q9DC48 Gm28265-201ENSMUST00000188201 2319 ntBASIC15.13■□□□□ 0.01
Cdc40Q9DC48 Gm17971-201ENSMUST00000190239 806 ntBASIC15.13■□□□□ 0.01
Cdc40Q9DC48 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC15.13■□□□□ 0.01
Cdc40Q9DC48 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC15.13■□□□□ 0.01
Cdc40Q9DC48 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Cdc40Q9DC48 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Cdc40Q9DC48 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdc40Q9DC48 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Cdc40Q9DC48 Ptprs-211ENSMUST00000223859 5588 ntBASIC15.13■□□□□ 0.01
Cdc40Q9DC48 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdc40Q9DC48 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Cdc40Q9DC48 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdc40Q9DC48 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Cdc40Q9DC48 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 20.5 ms