Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Ddx56Q9D0R4 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Ddx56Q9D0R4 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Ddx56Q9D0R4 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Ddx56Q9D0R4 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Ddx56Q9D0R4 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Ddx56Q9D0R4 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Ddx56Q9D0R4 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Ddx56Q9D0R4 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Ddx56Q9D0R4 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Ddx56Q9D0R4 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC17.17■□□□□ 0.34
Ddx56Q9D0R4 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC17.17■□□□□ 0.34
Ddx56Q9D0R4 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC17.17■□□□□ 0.34
Ddx56Q9D0R4 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Ddx56Q9D0R4 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Ddx56Q9D0R4 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Ddx56Q9D0R4 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Ddx56Q9D0R4 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Ddx56Q9D0R4 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Ddx56Q9D0R4 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
Ddx56Q9D0R4 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ddx56Q9D0R4 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ddx56Q9D0R4 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Ddx56Q9D0R4 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Ddx56Q9D0R4 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ddx56Q9D0R4 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC17.16■□□□□ 0.34
Ddx56Q9D0R4 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Ddx56Q9D0R4 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ddx56Q9D0R4 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Ddx56Q9D0R4 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ddx56Q9D0R4 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Ddx56Q9D0R4 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ddx56Q9D0R4 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ddx56Q9D0R4 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ddx56Q9D0R4 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ddx56Q9D0R4 Gm9013-201ENSMUST00000132939 882 ntBASIC17.16■□□□□ 0.34
Ddx56Q9D0R4 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ddx56Q9D0R4 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Ddx56Q9D0R4 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC17.16■□□□□ 0.34
Ddx56Q9D0R4 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Ddx56Q9D0R4 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ddx56Q9D0R4 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Ddx56Q9D0R4 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ddx56Q9D0R4 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ddx56Q9D0R4 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ddx56Q9D0R4 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC17.16■□□□□ 0.34
Ddx56Q9D0R4 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ddx56Q9D0R4 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ddx56Q9D0R4 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ddx56Q9D0R4 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Ddx56Q9D0R4 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ddx56Q9D0R4 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Ddx56Q9D0R4 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ddx56Q9D0R4 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ddx56Q9D0R4 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ddx56Q9D0R4 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Ddx56Q9D0R4 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ddx56Q9D0R4 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC17.15■□□□□ 0.34
Ddx56Q9D0R4 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ddx56Q9D0R4 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ddx56Q9D0R4 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ddx56Q9D0R4 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Ddx56Q9D0R4 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ddx56Q9D0R4 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ddx56Q9D0R4 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ddx56Q9D0R4 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ddx56Q9D0R4 Gm14464-201ENSMUST00000119658 1254 ntBASIC17.15■□□□□ 0.34
Ddx56Q9D0R4 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Ddx56Q9D0R4 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC17.15■□□□□ 0.34
Ddx56Q9D0R4 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Ddx56Q9D0R4 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ddx56Q9D0R4 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ddx56Q9D0R4 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ddx56Q9D0R4 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ddx56Q9D0R4 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ddx56Q9D0R4 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ddx56Q9D0R4 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Ddx56Q9D0R4 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Ddx56Q9D0R4 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Ddx56Q9D0R4 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Ddx56Q9D0R4 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
Ddx56Q9D0R4 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
Ddx56Q9D0R4 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Ddx56Q9D0R4 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Ddx56Q9D0R4 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Ddx56Q9D0R4 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Ddx56Q9D0R4 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Ddx56Q9D0R4 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Ddx56Q9D0R4 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Ddx56Q9D0R4 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Ddx56Q9D0R4 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Ddx56Q9D0R4 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Ddx56Q9D0R4 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Ddx56Q9D0R4 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC17.14■□□□□ 0.33
Ddx56Q9D0R4 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Ddx56Q9D0R4 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC17.14■□□□□ 0.33
Ddx56Q9D0R4 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Ddx56Q9D0R4 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Ddx56Q9D0R4 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC17.14■□□□□ 0.33
Ddx56Q9D0R4 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 25.6 ms