Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Syne4Q8CII8 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
Syne4Q8CII8 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC18.44■□□□□ 0.54
Syne4Q8CII8 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Syne4Q8CII8 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Syne4Q8CII8 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC18.44■□□□□ 0.54
Syne4Q8CII8 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Syne4Q8CII8 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC18.44■□□□□ 0.54
Syne4Q8CII8 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC18.44■□□□□ 0.54
Syne4Q8CII8 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC18.44■□□□□ 0.54
Syne4Q8CII8 Crb3-201ENSMUST00000071826 1194 ntAPPRIS P3 TSL 3 BASIC18.44■□□□□ 0.54
Syne4Q8CII8 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Syne4Q8CII8 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Syne4Q8CII8 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
Syne4Q8CII8 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Syne4Q8CII8 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC18.44■□□□□ 0.54
Syne4Q8CII8 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Syne4Q8CII8 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Syne4Q8CII8 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Syne4Q8CII8 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Syne4Q8CII8 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Syne4Q8CII8 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
Syne4Q8CII8 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Syne4Q8CII8 Haghl-211ENSMUST00000150324 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Syne4Q8CII8 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Syne4Q8CII8 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
Syne4Q8CII8 Dmtn-207ENSMUST00000228001 2437 ntBASIC18.43■□□□□ 0.54
Syne4Q8CII8 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Syne4Q8CII8 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
Syne4Q8CII8 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Syne4Q8CII8 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Syne4Q8CII8 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Syne4Q8CII8 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Syne4Q8CII8 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Syne4Q8CII8 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Syne4Q8CII8 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
Syne4Q8CII8 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Syne4Q8CII8 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Syne4Q8CII8 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
Syne4Q8CII8 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Syne4Q8CII8 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Syne4Q8CII8 Fuz-213ENSMUST00000209039 1453 ntTSL 5 BASIC18.42■□□□□ 0.54
Syne4Q8CII8 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Syne4Q8CII8 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Syne4Q8CII8 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Syne4Q8CII8 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC18.42■□□□□ 0.54
Syne4Q8CII8 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Syne4Q8CII8 Gm27646-201ENSMUST00000183989 110 ntBASIC18.42■□□□□ 0.54
Syne4Q8CII8 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
Syne4Q8CII8 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC18.42■□□□□ 0.54
Syne4Q8CII8 Gm18622-201ENSMUST00000219361 595 ntBASIC18.42■□□□□ 0.54
Syne4Q8CII8 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Syne4Q8CII8 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Syne4Q8CII8 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC18.42■□□□□ 0.54
Syne4Q8CII8 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Syne4Q8CII8 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Syne4Q8CII8 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Syne4Q8CII8 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Syne4Q8CII8 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Syne4Q8CII8 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Syne4Q8CII8 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Syne4Q8CII8 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC18.41■□□□□ 0.54
Syne4Q8CII8 1700025N23Rik-201ENSMUST00000186189 915 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Syne4Q8CII8 Higd1a-206ENSMUST00000215300 605 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
Syne4Q8CII8 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC18.41■□□□□ 0.54
Syne4Q8CII8 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC18.41■□□□□ 0.54
Syne4Q8CII8 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Syne4Q8CII8 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Syne4Q8CII8 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Syne4Q8CII8 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
Syne4Q8CII8 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
Syne4Q8CII8 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Syne4Q8CII8 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Syne4Q8CII8 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Syne4Q8CII8 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Syne4Q8CII8 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Syne4Q8CII8 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
Syne4Q8CII8 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Syne4Q8CII8 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Syne4Q8CII8 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Syne4Q8CII8 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Syne4Q8CII8 Zcchc6-207ENSMUST00000225576 2499 ntBASIC18.4■□□□□ 0.54
Syne4Q8CII8 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Syne4Q8CII8 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC18.4■□□□□ 0.54
Syne4Q8CII8 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
Syne4Q8CII8 Chchd1-203ENSMUST00000224633 557 ntBASIC18.4■□□□□ 0.54
Syne4Q8CII8 Psmb4-201ENSMUST00000005923 1183 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Syne4Q8CII8 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Syne4Q8CII8 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Syne4Q8CII8 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Syne4Q8CII8 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Syne4Q8CII8 Gm11873-201ENSMUST00000117877 1304 ntBASIC18.4■□□□□ 0.54
Syne4Q8CII8 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Syne4Q8CII8 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Syne4Q8CII8 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Syne4Q8CII8 Shroom3-211ENSMUST00000225438 5742 ntBASIC18.4■□□□□ 0.54
Syne4Q8CII8 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Syne4Q8CII8 Gm37519-201ENSMUST00000191687 2210 ntBASIC18.39■□□□□ 0.54
Syne4Q8CII8 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Syne4Q8CII8 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 25.8 ms