Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim9Q8C7M3 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Trim9Q8C7M3 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim9Q8C7M3 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim9Q8C7M3 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim9Q8C7M3 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
Trim9Q8C7M3 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim9Q8C7M3 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim9Q8C7M3 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
Trim9Q8C7M3 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
Trim9Q8C7M3 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC18.04■□□□□ 0.48
Trim9Q8C7M3 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC18.04■□□□□ 0.48
Trim9Q8C7M3 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Trim9Q8C7M3 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trim9Q8C7M3 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Trim9Q8C7M3 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim9Q8C7M3 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Trim9Q8C7M3 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim9Q8C7M3 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Trim9Q8C7M3 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim9Q8C7M3 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC18.03■□□□□ 0.48
Trim9Q8C7M3 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim9Q8C7M3 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim9Q8C7M3 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim9Q8C7M3 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
Trim9Q8C7M3 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim9Q8C7M3 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim9Q8C7M3 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim9Q8C7M3 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim9Q8C7M3 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trim9Q8C7M3 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC18.02■□□□□ 0.48
Trim9Q8C7M3 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trim9Q8C7M3 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC18.02■□□□□ 0.48
Trim9Q8C7M3 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
Trim9Q8C7M3 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trim9Q8C7M3 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Trim9Q8C7M3 Gm42918-201ENSMUST00000199249 1580 ntBASIC18.02■□□□□ 0.48
Trim9Q8C7M3 Gm5587-201ENSMUST00000206270 674 ntBASIC18.02■□□□□ 0.48
Trim9Q8C7M3 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
Trim9Q8C7M3 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trim9Q8C7M3 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
Trim9Q8C7M3 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
Trim9Q8C7M3 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trim9Q8C7M3 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Trim9Q8C7M3 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trim9Q8C7M3 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
Trim9Q8C7M3 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Trim9Q8C7M3 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Trim9Q8C7M3 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Trim9Q8C7M3 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
Trim9Q8C7M3 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC18.01■□□□□ 0.47
Trim9Q8C7M3 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Trim9Q8C7M3 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim9Q8C7M3 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim9Q8C7M3 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
Trim9Q8C7M3 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim9Q8C7M3 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Trim9Q8C7M3 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC18.01■□□□□ 0.47
Trim9Q8C7M3 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC18.01■□□□□ 0.47
Trim9Q8C7M3 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC18.01■□□□□ 0.47
Trim9Q8C7M3 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim9Q8C7M3 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Trim9Q8C7M3 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim9Q8C7M3 Aste1-202ENSMUST00000123807 2349 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
Trim9Q8C7M3 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim9Q8C7M3 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim9Q8C7M3 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Trim9Q8C7M3 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim9Q8C7M3 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim9Q8C7M3 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC18.01■□□□□ 0.47
Trim9Q8C7M3 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC18.01■□□□□ 0.47
Trim9Q8C7M3 AC069562.2-201ENSMUST00000224644 2146 ntBASIC18.01■□□□□ 0.47
Trim9Q8C7M3 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trim9Q8C7M3 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Trim9Q8C7M3 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim9Q8C7M3 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim9Q8C7M3 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim9Q8C7M3 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Trim9Q8C7M3 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
Trim9Q8C7M3 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim9Q8C7M3 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
Trim9Q8C7M3 Gm6345-202ENSMUST00000180900 204 ntBASIC18■□□□□ 0.47
Trim9Q8C7M3 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC18■□□□□ 0.47
Trim9Q8C7M3 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC18■□□□□ 0.47
Trim9Q8C7M3 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim9Q8C7M3 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim9Q8C7M3 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim9Q8C7M3 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim9Q8C7M3 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
Trim9Q8C7M3 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Trim9Q8C7M3 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trim9Q8C7M3 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC18■□□□□ 0.47
Trim9Q8C7M3 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
Trim9Q8C7M3 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim9Q8C7M3 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim9Q8C7M3 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim9Q8C7M3 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC17.99■□□□□ 0.47
Trim9Q8C7M3 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trim9Q8C7M3 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Trim9Q8C7M3 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC17.99■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms