Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Sh3rf1Q69ZI1 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC16.58■□□□□ 0.24
Sh3rf1Q69ZI1 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Sh3rf1Q69ZI1 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Sh3rf1Q69ZI1 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Sh3rf1Q69ZI1 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Sh3rf1Q69ZI1 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Sh3rf1Q69ZI1 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Sh3rf1Q69ZI1 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Sh3rf1Q69ZI1 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Sh3rf1Q69ZI1 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Sh3rf1Q69ZI1 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Sh3rf1Q69ZI1 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Sh3rf1Q69ZI1 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Sh3rf1Q69ZI1 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Sh3rf1Q69ZI1 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Sh3rf1Q69ZI1 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Sh3rf1Q69ZI1 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Sh3rf1Q69ZI1 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Sh3rf1Q69ZI1 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Sh3rf1Q69ZI1 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Sh3rf1Q69ZI1 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Sh3rf1Q69ZI1 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Sh3rf1Q69ZI1 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC16.57■□□□□ 0.24
Sh3rf1Q69ZI1 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC16.57■□□□□ 0.24
Sh3rf1Q69ZI1 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC16.57■□□□□ 0.24
Sh3rf1Q69ZI1 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Sh3rf1Q69ZI1 Gm33142-201ENSMUST00000193913 867 ntBASIC16.57■□□□□ 0.24
Sh3rf1Q69ZI1 Gm45212-201ENSMUST00000205831 3403 ntBASIC16.57■□□□□ 0.24
Sh3rf1Q69ZI1 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Sh3rf1Q69ZI1 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Sh3rf1Q69ZI1 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC16.57■□□□□ 0.24
Sh3rf1Q69ZI1 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Sh3rf1Q69ZI1 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
Sh3rf1Q69ZI1 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Sh3rf1Q69ZI1 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Sh3rf1Q69ZI1 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
Sh3rf1Q69ZI1 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Sh3rf1Q69ZI1 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Sh3rf1Q69ZI1 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
Sh3rf1Q69ZI1 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
Sh3rf1Q69ZI1 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Sh3rf1Q69ZI1 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Sh3rf1Q69ZI1 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Sh3rf1Q69ZI1 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Sh3rf1Q69ZI1 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC16.56■□□□□ 0.24
Sh3rf1Q69ZI1 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Sh3rf1Q69ZI1 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Sh3rf1Q69ZI1 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Sh3rf1Q69ZI1 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC16.56■□□□□ 0.24
Sh3rf1Q69ZI1 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Sh3rf1Q69ZI1 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Sh3rf1Q69ZI1 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Sh3rf1Q69ZI1 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC16.56■□□□□ 0.24
Sh3rf1Q69ZI1 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
Sh3rf1Q69ZI1 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Sh3rf1Q69ZI1 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Sh3rf1Q69ZI1 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Sh3rf1Q69ZI1 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Sh3rf1Q69ZI1 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Sh3rf1Q69ZI1 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Sh3rf1Q69ZI1 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC16.55■□□□□ 0.24
Sh3rf1Q69ZI1 Gm9867-201ENSMUST00000192212 2647 ntBASIC16.55■□□□□ 0.24
Sh3rf1Q69ZI1 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
Sh3rf1Q69ZI1 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
Sh3rf1Q69ZI1 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
Sh3rf1Q69ZI1 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Sh3rf1Q69ZI1 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Sh3rf1Q69ZI1 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Sh3rf1Q69ZI1 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Sh3rf1Q69ZI1 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Sh3rf1Q69ZI1 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC16.55■□□□□ 0.24
Sh3rf1Q69ZI1 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Sh3rf1Q69ZI1 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Sh3rf1Q69ZI1 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Sh3rf1Q69ZI1 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Sh3rf1Q69ZI1 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Sh3rf1Q69ZI1 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Sh3rf1Q69ZI1 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Sh3rf1Q69ZI1 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC16.55■□□□□ 0.24
Sh3rf1Q69ZI1 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Sh3rf1Q69ZI1 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Sh3rf1Q69ZI1 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Sh3rf1Q69ZI1 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC16.55■□□□□ 0.24
Sh3rf1Q69ZI1 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Sh3rf1Q69ZI1 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Sh3rf1Q69ZI1 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
Sh3rf1Q69ZI1 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Sh3rf1Q69ZI1 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Sh3rf1Q69ZI1 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC16.54■□□□□ 0.24
Sh3rf1Q69ZI1 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Sh3rf1Q69ZI1 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Sh3rf1Q69ZI1 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Sh3rf1Q69ZI1 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Sh3rf1Q69ZI1 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
Sh3rf1Q69ZI1 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Sh3rf1Q69ZI1 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC16.54■□□□□ 0.24
Sh3rf1Q69ZI1 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
Sh3rf1Q69ZI1 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Sh3rf1Q69ZI1 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms