Protein–RNA interactions for Protein: Q61124

Cln3, Battenin, mousemouse

Predictions only

Length 438 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cln3Q61124 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cln3Q61124 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cln3Q61124 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cln3Q61124 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cln3Q61124 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cln3Q61124 Gm11841-201ENSMUST00000117060 1963 ntBASIC17.85■□□□□ 0.45
Cln3Q61124 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cln3Q61124 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Cln3Q61124 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cln3Q61124 Gm27646-201ENSMUST00000183989 110 ntBASIC17.85■□□□□ 0.45
Cln3Q61124 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Cln3Q61124 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC17.85■□□□□ 0.45
Cln3Q61124 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
Cln3Q61124 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Cln3Q61124 Gm18622-201ENSMUST00000219361 595 ntBASIC17.85■□□□□ 0.45
Cln3Q61124 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cln3Q61124 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Cln3Q61124 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cln3Q61124 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cln3Q61124 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Cln3Q61124 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cln3Q61124 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cln3Q61124 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Cln3Q61124 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cln3Q61124 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Cln3Q61124 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cln3Q61124 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cln3Q61124 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC17.84■□□□□ 0.45
Cln3Q61124 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cln3Q61124 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC17.84■□□□□ 0.45
Cln3Q61124 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC17.84■□□□□ 0.45
Cln3Q61124 AC225888.1-201ENSMUST00000227184 728 ntBASIC17.84■□□□□ 0.45
Cln3Q61124 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cln3Q61124 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cln3Q61124 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cln3Q61124 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Cln3Q61124 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cln3Q61124 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
Cln3Q61124 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Cln3Q61124 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Cln3Q61124 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Cln3Q61124 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC17.84■□□□□ 0.45
Cln3Q61124 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Cln3Q61124 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Cln3Q61124 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
Cln3Q61124 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
Cln3Q61124 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Cln3Q61124 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Cln3Q61124 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Cln3Q61124 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Cln3Q61124 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Cln3Q61124 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC17.83■□□□□ 0.44
Cln3Q61124 Gm14822-201ENSMUST00000122247 291 ntBASIC17.83■□□□□ 0.44
Cln3Q61124 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC17.83■□□□□ 0.44
Cln3Q61124 Gm25911-201ENSMUST00000157621 56 ntBASIC17.83■□□□□ 0.44
Cln3Q61124 Gm5682-201ENSMUST00000173402 505 ntBASIC17.83■□□□□ 0.44
Cln3Q61124 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC17.83■□□□□ 0.44
Cln3Q61124 Gm29456-201ENSMUST00000189894 768 ntTSL 3 BASIC17.83■□□□□ 0.44
Cln3Q61124 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Cln3Q61124 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Cln3Q61124 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
Cln3Q61124 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Cln3Q61124 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC17.83■□□□□ 0.44
Cln3Q61124 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Cln3Q61124 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
Cln3Q61124 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Cln3Q61124 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Cln3Q61124 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Cln3Q61124 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Cln3Q61124 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Cln3Q61124 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
Cln3Q61124 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC17.82■□□□□ 0.44
Cln3Q61124 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC17.82■□□□□ 0.44
Cln3Q61124 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cln3Q61124 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
Cln3Q61124 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cln3Q61124 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cln3Q61124 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC17.82■□□□□ 0.44
Cln3Q61124 Tmsb4x-202ENSMUST00000112175 864 ntTSL 2 BASIC17.82■□□□□ 0.44
Cln3Q61124 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC17.82■□□□□ 0.44
Cln3Q61124 Gm24513-201ENSMUST00000174964 138 ntBASIC17.82■□□□□ 0.44
Cln3Q61124 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC17.82■□□□□ 0.44
Cln3Q61124 Rnf7-202ENSMUST00000071301 334 ntTSL 2 BASIC17.82■□□□□ 0.44
Cln3Q61124 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cln3Q61124 Gm10175-201ENSMUST00000086013 645 ntBASIC17.82■□□□□ 0.44
Cln3Q61124 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cln3Q61124 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Cln3Q61124 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cln3Q61124 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Cln3Q61124 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cln3Q61124 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cln3Q61124 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cln3Q61124 Zkscan2-203ENSMUST00000128217 2218 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Cln3Q61124 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Cln3Q61124 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cln3Q61124 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Cln3Q61124 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Cln3Q61124 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Cln3Q61124 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Cln3Q61124 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 34.5 ms