Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Vps54Q5SPW0 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC19.58■□□□□ 0.73
Vps54Q5SPW0 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Vps54Q5SPW0 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Vps54Q5SPW0 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC19.58■□□□□ 0.72
Vps54Q5SPW0 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Vps54Q5SPW0 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Vps54Q5SPW0 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Vps54Q5SPW0 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Vps54Q5SPW0 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Vps54Q5SPW0 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Vps54Q5SPW0 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC19.57■□□□□ 0.72
Vps54Q5SPW0 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
Vps54Q5SPW0 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Vps54Q5SPW0 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Vps54Q5SPW0 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Vps54Q5SPW0 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Vps54Q5SPW0 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Vps54Q5SPW0 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Vps54Q5SPW0 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC19.57■□□□□ 0.72
Vps54Q5SPW0 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Vps54Q5SPW0 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Vps54Q5SPW0 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Vps54Q5SPW0 Nagk-201ENSMUST00000037376 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Vps54Q5SPW0 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
Vps54Q5SPW0 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Vps54Q5SPW0 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Vps54Q5SPW0 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Vps54Q5SPW0 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC19.56■□□□□ 0.72
Vps54Q5SPW0 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Vps54Q5SPW0 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Vps54Q5SPW0 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Vps54Q5SPW0 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Vps54Q5SPW0 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Vps54Q5SPW0 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Vps54Q5SPW0 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC19.56■□□□□ 0.72
Vps54Q5SPW0 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Vps54Q5SPW0 AC153889.1-201ENSMUST00000219257 330 ntBASIC19.56■□□□□ 0.72
Vps54Q5SPW0 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Vps54Q5SPW0 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
Vps54Q5SPW0 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Vps54Q5SPW0 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Vps54Q5SPW0 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
Vps54Q5SPW0 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
Vps54Q5SPW0 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Vps54Q5SPW0 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
Vps54Q5SPW0 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Vps54Q5SPW0 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Vps54Q5SPW0 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Vps54Q5SPW0 Gm26917-202ENSMUST00000192833 3329 ntBASIC19.55■□□□□ 0.72
Vps54Q5SPW0 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
Vps54Q5SPW0 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Vps54Q5SPW0 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC19.55■□□□□ 0.72
Vps54Q5SPW0 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC19.55■□□□□ 0.72
Vps54Q5SPW0 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC19.55■□□□□ 0.72
Vps54Q5SPW0 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Vps54Q5SPW0 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Vps54Q5SPW0 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Vps54Q5SPW0 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Vps54Q5SPW0 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Vps54Q5SPW0 Spr-ps1-201ENSMUST00000089584 605 ntBASIC19.55■□□□□ 0.72
Vps54Q5SPW0 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC19.55■□□□□ 0.72
Vps54Q5SPW0 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
Vps54Q5SPW0 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Vps54Q5SPW0 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
Vps54Q5SPW0 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
Vps54Q5SPW0 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Vps54Q5SPW0 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC19.54■□□□□ 0.72
Vps54Q5SPW0 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Vps54Q5SPW0 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Vps54Q5SPW0 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC19.54■□□□□ 0.72
Vps54Q5SPW0 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Vps54Q5SPW0 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Vps54Q5SPW0 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Vps54Q5SPW0 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Vps54Q5SPW0 Gm32996-201ENSMUST00000199828 1447 ntBASIC19.54■□□□□ 0.72
Vps54Q5SPW0 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Vps54Q5SPW0 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
Vps54Q5SPW0 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
Vps54Q5SPW0 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC19.54■□□□□ 0.72
Vps54Q5SPW0 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Vps54Q5SPW0 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
Vps54Q5SPW0 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
Vps54Q5SPW0 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
Vps54Q5SPW0 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC19.54■□□□□ 0.72
Vps54Q5SPW0 Haglr-201ENSMUST00000100000 2085 ntBASIC19.54■□□□□ 0.72
Vps54Q5SPW0 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Vps54Q5SPW0 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
Vps54Q5SPW0 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Vps54Q5SPW0 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Vps54Q5SPW0 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC19.54■□□□□ 0.72
Vps54Q5SPW0 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Vps54Q5SPW0 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Vps54Q5SPW0 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Vps54Q5SPW0 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Vps54Q5SPW0 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Vps54Q5SPW0 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Vps54Q5SPW0 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
Vps54Q5SPW0 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Vps54Q5SPW0 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 22.9 ms