Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC15.9■□□□□ 0.14
Col28a1Q2UY11 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col28a1Q2UY11 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col28a1Q2UY11 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col28a1Q2UY11 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Col28a1Q2UY11 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
Col28a1Q2UY11 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col28a1Q2UY11 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Col28a1Q2UY11 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Col28a1Q2UY11 Gm30025-201ENSMUST00000218555 728 ntBASIC15.9■□□□□ 0.14
Col28a1Q2UY11 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col28a1Q2UY11 Gm8668-201ENSMUST00000120559 1447 ntBASIC15.9■□□□□ 0.14
Col28a1Q2UY11 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col28a1Q2UY11 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Col28a1Q2UY11 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col28a1Q2UY11 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Col28a1Q2UY11 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Col28a1Q2UY11 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC15.9■□□□□ 0.14
Col28a1Q2UY11 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col28a1Q2UY11 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col28a1Q2UY11 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Col28a1Q2UY11 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col28a1Q2UY11 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
Col28a1Q2UY11 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.14
Col28a1Q2UY11 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col28a1Q2UY11 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col28a1Q2UY11 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
Col28a1Q2UY11 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col28a1Q2UY11 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Col28a1Q2UY11 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col28a1Q2UY11 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC15.89■□□□□ 0.13
Col28a1Q2UY11 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Col28a1Q2UY11 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC15.89■□□□□ 0.13
Col28a1Q2UY11 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC15.89■□□□□ 0.13
Col28a1Q2UY11 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Col28a1Q2UY11 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC15.89■□□□□ 0.13
Col28a1Q2UY11 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC15.89■□□□□ 0.13
Col28a1Q2UY11 Gm21814-202ENSMUST00000203277 873 ntBASIC15.89■□□□□ 0.13
Col28a1Q2UY11 Arhgef4-208ENSMUST00000211073 171 ntBASIC15.89■□□□□ 0.13
Col28a1Q2UY11 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
Col28a1Q2UY11 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC15.89■□□□□ 0.13
Col28a1Q2UY11 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col28a1Q2UY11 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC15.89■□□□□ 0.13
Col28a1Q2UY11 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Col28a1Q2UY11 AC153526.5-201ENSMUST00000218661 2147 ntBASIC15.89■□□□□ 0.13
Col28a1Q2UY11 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Col28a1Q2UY11 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Col28a1Q2UY11 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC15.88■□□□□ 0.13
Col28a1Q2UY11 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Col28a1Q2UY11 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC15.88■□□□□ 0.13
Col28a1Q2UY11 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Col28a1Q2UY11 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Col28a1Q2UY11 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC15.88■□□□□ 0.13
Col28a1Q2UY11 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Col28a1Q2UY11 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC15.88■□□□□ 0.13
Col28a1Q2UY11 Gm16042-201ENSMUST00000204813 1247 ntBASIC15.88■□□□□ 0.13
Col28a1Q2UY11 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Col28a1Q2UY11 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
Col28a1Q2UY11 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
Col28a1Q2UY11 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Col28a1Q2UY11 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Col28a1Q2UY11 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
Col28a1Q2UY11 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC15.88■□□□□ 0.13
Col28a1Q2UY11 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col28a1Q2UY11 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col28a1Q2UY11 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Col28a1Q2UY11 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Col28a1Q2UY11 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col28a1Q2UY11 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
Col28a1Q2UY11 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Col28a1Q2UY11 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC15.87■□□□□ 0.13
Col28a1Q2UY11 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
Col28a1Q2UY11 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Col28a1Q2UY11 Gm24841-201ENSMUST00000158676 357 ntBASIC15.87■□□□□ 0.13
Col28a1Q2UY11 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC15.87■□□□□ 0.13
Col28a1Q2UY11 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col28a1Q2UY11 Gm17661-201ENSMUST00000170317 270 ntBASIC15.87■□□□□ 0.13
Col28a1Q2UY11 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC15.87■□□□□ 0.13
Col28a1Q2UY11 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col28a1Q2UY11 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col28a1Q2UY11 Jade2-201ENSMUST00000020655 6273 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col28a1Q2UY11 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC15.87■□□□□ 0.13
Col28a1Q2UY11 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col28a1Q2UY11 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Col28a1Q2UY11 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col28a1Q2UY11 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col28a1Q2UY11 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col28a1Q2UY11 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col28a1Q2UY11 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Col28a1Q2UY11 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col28a1Q2UY11 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col28a1Q2UY11 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col28a1Q2UY11 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
Col28a1Q2UY11 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC15.86■□□□□ 0.13
Col28a1Q2UY11 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC15.86■□□□□ 0.13
Col28a1Q2UY11 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col28a1Q2UY11 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col28a1Q2UY11 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col28a1Q2UY11 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col28a1Q2UY11 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Retrieved 100 of 76,532 protein–RNA pairs in 43.7 ms